Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3572 ATGAGTGATCCAAATCATCATAGTGATGATGAATTCAACAACGATGAAGACGAAGACAACAATGATGTTTTCATTGATGACTCTGATATCATCCATGAAGTTGCCTCTGACGATGAACTTCTTCCTGATGCACCTGACGACAATCCAGATGGTCCTGGCGGCTCTCCCGGTCCAGATGGTGGTGGCGGTGGTGGTAGTGGTTATGACGATGATTCTGTGCATACATTCACCGGTCATGAAGGGGAGTTATATACAGTTGCCTGTAGCCCAACAGACGAGGCACTGGTGGCAACAGGAGCTGGTGATGACGTAGGATTTCTCTGGAGGATCCTTAATGGAGAATGGGCTTCCCAGCTTAATGGTCATAAAGATTCTGTATCGAGTTTAGGGTTTAGCCATGATGGAACGTTTTTGGCATCAGGAAGTTTTGATGGAACTGTTAAAATCTGGGATGCATCTGGAAATCTGAAAGGCACGCTTGATGGTCCTGAAGGGGGTGTTGAGTGGCTCAGGTGGCATCCAAGAGGAAACGTCCTCATTGCTGGTTTTGATGAATCCTCCTCAGTGTGGATGTGGAATAGTAATCTTGACTTCCTTATGTCGTTTAATGGTCATGCTGGTAGTGTGACCTGTGGTGATTTTACTCCCGATGGGAGAACAATATGTACTGGTTCTGACGATGCAACCTTGAGAATATGGAACCCAAAAAGTGGAGAAAGCATTCATGTTGTGCGAGGTCATCCATACCATACCGAGGGAATAACATGTTTAGCAATAAATTCAACTTCAACTATTGCTCTTACTGGTTCTGTGGATGGATCTGTTCATATTGTGAATATCACTACAGGAAGAGTTGTTAGTACCCTGCCTTCTCATTCAAGTTCCATTGAGTGTGTTGGATTCGCACCAAGTGGTTCCTGGGCTGCAATTGGAGGCATGGATAAAATGACCATCTGGGATGTAGAGCACTCCTTAGCCCGAAGCATTTGTGAGCATGAGTATGGAGTGACATGTTCAACCTGGCTTGGCACATCGTATGTGGCTACTGGATCTAATGATGGAGCTGTGAGATTATGGGACAGTCGATCTGGTGAATGTGTCAGAACATTTAGAGGGCACTCTGAAAGCATTCAATCTCTTTCTTTGTCTGCTAATCAAGAGTACCTTGTCTCGGCTTCTTTAGATCACACAGCTCGTGTTTTCGATGTTAAAGGAGTTTGTTAA 1224 0.4477 MSDPNHHSDDEFNNDEDEDNNDVFIDDSDIIHEVASDDELLPDAPDDNPDGPGGSPGPDGGGGGGSGYDDDSVHTFTGHEGELYTVACSPTDEALVATGAGDDVGFLWRILNGEWASQLNGHKDSVSSLGFSHDGTFLASGSFDGTVKIWDASGNLKGTLDGPEGGVEWLRWHPRGNVLIAGFDESSSVWMWNSNLDFLMSFNGHAGSVTCGDFTPDGRTICTGSDDATLRIWNPKSGESIHVVRGHPYHTEGITCLAINSTSTIALTGSVDGSVHIVNITTGRVVSTLPSHSSSIECVGFAPSGSWAAIGGMDKMTIWDVEHSLARSICEHEYGVTCSTWLGTSYVATGSNDGAVRLWDSRSGECVRTFRGHSESIQSLSLSANQEYLVSASLDHTARVFDVKGVC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3572 407 ProSitePatterns Trp-Asp (WD) repeats signature. 347 361 IPR019775 -
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 151 IPR001680 GO:0005515
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 369 IPR001680 GO:0005515
Mtr1g3572 407 SUPERFAMILY WD40 repeat-like 75 403 IPR036322 GO:0005515
Mtr1g3572 407 MobiDBLite consensus disorder prediction 25 39 - -
Mtr1g3572 407 Pfam WD domain, G-beta repeat 199 234 IPR001680 GO:0005515
Mtr1g3572 407 Pfam WD domain, G-beta repeat 119 151 IPR001680 GO:0005515
Mtr1g3572 407 Pfam WD domain, G-beta repeat 332 360 IPR001680 GO:0005515
Mtr1g3572 407 Pfam WD domain, G-beta repeat 239 277 IPR001680 GO:0005515
Mtr1g3572 407 Pfam WD domain, G-beta repeat 364 402 IPR001680 GO:0005515
Mtr1g3572 407 Pfam WD domain, G-beta repeat 284 315 IPR001680 GO:0005515
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 76 118 IPR001680 GO:0005515
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 407 IPR001680 GO:0005515
Mtr1g3572 407 CDD WD40 118 402 - -
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Mtr1g3572 407 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 8 404 - -
Mtr1g3572 407 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 8 404 - -
Mtr1g3572 407 PRINTS G protein beta WD-40 repeat signature 138 152 IPR020472 -
Mtr1g3572 407 PRINTS G protein beta WD-40 repeat signature 221 235 IPR020472 -
Mtr1g3572 407 PRINTS G protein beta WD-40 repeat signature 347 361 IPR020472 -
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 151 - -
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 365 - -
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 370 407 - -
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 288 IPR001680 GO:0005515
Mtr1g3572 407 SMART WD40_4 153 193 IPR001680 GO:0005515
Mtr1g3572 407 SMART WD40_4 112 151 IPR001680 GO:0005515
Mtr1g3572 407 SMART WD40_4 195 234 IPR001680 GO:0005515
Mtr1g3572 407 SMART WD40_4 69 109 IPR001680 GO:0005515
Mtr1g3572 407 SMART WD40_4 282 320 IPR001680 GO:0005515
Mtr1g3572 407 SMART WD40_4 322 360 IPR001680 GO:0005515
Mtr1g3572 407 SMART WD40_4 363 402 IPR001680 GO:0005515
Mtr1g3572 407 SMART WD40_4 237 279 IPR001680 GO:0005515
Mtr1g3572 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 239 - -
Mtr1g3572 407 MobiDBLite consensus disorder prediction 1 76 - -
Mtr1g3572 407 Gene3D - 68 405 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3572 Mtr-Chr1 47454655 47462286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3572 199 404 Miscellaneous Gene Families AT5G08390 25.701 7.57e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3572 K24725 - gmx:100790414 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3572 1 47454655 47462286 Mtr1g3572 1 47454655 47462286 ECH