Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1476 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1477 . . . . . . . . Aev09g2077 . . . Aip09g03201 . . . Amo19g3500 . . Apr6g1422 . . . . . . . . Car04g01066 . . . . . Dod06g0952 . . . . . Gma10g02095 Gma20g01622 . . Gso10g1959 Gso10g1959 . . Lal13g0093 Lal12g0115 Lal24g0088 . . . Lan20g0109 Lan20g0109 Lan20g0109 . . . . . . . . . . . . . . . Lja5g0797 Lja2g2852 Mal1g2228 . . . . . . . Mtr1g3573 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g2857 Tpr1g0918 . . . Tsu01g04233 . . . . . . . . . . . . .
Vvi18g1478 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1479 . . . . . . . . Aev09g2078 . Ahy19g2737 . Aip09g03203 . . . . . . Apr6g1423 . . . . . . . . . . . . . . . . . . . . . Gma20g01619 . . . . . . Lal13g0090 . . . . . Lan20g0107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1480 . . . . . . . . Aev09g2079 . Ahy19g2739 . Aip09g03206 . . . Amo19g3503 . . Apr6g1430 . . . . . . . . . . . . . . . . . . . . Gma10g02098 Gma20g01618 . . Gso10g1962 Gso10g1962 . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g0792 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g2859 . . . . . . . . . . . . . . . . . .
Vvi18g1481 . . . . . . . . Aev09g2080 . Ahy19g2743 . Aip09g03207 . . . . . . . . . . . . . . . . . . . . . Dod06g0948 . . . . . . . Gma16g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g0791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g2860 . . . . . . . . . . . . . . . . . .
Vvi18g1482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1483 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1484 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1485 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1476 Chr18 18272469 18272741 -
Vvi Vvi18g1477 Chr18 18295890 18300713 +
Aev Aev09g2077 Chr09 23936876 23941395 -
Aip Aip09g03201 Chr09 137522891 137534055 -
Amo Amo19g3500 Chr19 148865163 148870049 -
Apr Apr6g1422 Chr6 22605093 22612411 -
Car Car04g01066 Chr04 10827595 10831868 -
Dod Dod06g0952 Chr06 12085121 12095609 +
Gma Gma10g02095 Chr10 48477263 48484257 -
Gma Gma20g01622 Chr20 43297983 43304474 +
Gso Gso10g1959 Chr10 46602831 46609919 -
Gso Gso10g1959 Chr10 46602831 46609919 -
Lal Lal13g0093 Chr13 602154 607848 +
Lal Lal12g0115 Chr12 768899 774412 +
Lal Lal24g0088 Chr24 568615 574053 +
Lan Lan20g0109 Chr20 656057 666281 +
Lan Lan20g0109 Chr20 656057 666281 +
Lan Lan20g0109 Chr20 656057 666281 +
Lja Lja5g0797 Chr5 7383994 7389411 +
Lja Lja2g2852 Chr2 46089028 46096548 +
Mal Mal1g2228 Chr1 29430585 29434558 +
Mtr Mtr1g3573 Chr1 47463805 47468697 -
Sto Sto8g2857 Chr8 20801775 20808786 -
Tpr Tpr1g0918 Chr1 7822694 7826708 +
Tsu Tsu01g04233 Chr01 50193332 50197615 -
Vvi Vvi18g1478 Chr18 18303115 18303387 -
Vvi Vvi18g1479 Chr18 18303806 18304424 -
Aev Aev09g2078 Chr09 23950132 23952581 -
Ahy Ahy19g2737 Chr19 148789654 148791518 -
Aip Aip09g03203 Chr09 137603335 137605313 -
Apr Apr6g1423 Chr6 22690431 22695697 +
Gma Gma20g01619 Chr20 43267501 43271365 -
Lal Lal13g0090 Chr13 592227 594675 -
Lan Lan20g0107 Chr20 636505 639231 -
Vvi Vvi18g1480 Chr18 18330249 18333768 +
Aev Aev09g2079 Chr09 23960015 23963650 +
Ahy Ahy19g2739 Chr19 148816732 148819408 -
Aip Aip09g03206 Chr09 137630042 137633545 -
Amo Amo19g3503 Chr19 148911411 148919297 -
Apr Apr6g1430 Chr6 23087111 23089650 -
Gma Gma10g02098 Chr10 48511308 48514238 +
Gma Gma20g01618 Chr20 43261581 43266007 +
Gso Gso10g1962 Chr10 46636855 46640317 +
Gso Gso10g1962 Chr10 46636855 46640317 +
Lja Lja5g0792 Chr5 7320828 7323772 +
Sto Sto8g2859 Chr8 20860674 20863183 -
Vvi Vvi18g1481 Chr18 18349989 18351389 +
Aev Aev09g2080 Chr09 23964483 23966696 -
Ahy Ahy19g2743 Chr19 148927273 148932432 +
Aip Aip09g03207 Chr09 137724927 137729853 +
Dod Dod06g0948 Chr06 11987406 11990585 -
Gma Gma16g01442 Chr16 33488331 33491645 -
Lja Lja5g0791 Chr5 7311361 7313933 +
Sto Sto8g2860 Chr8 20871296 20873344 +
Vvi Vvi18g1482 Chr18 18364207 18365185 -
Vvi Vvi18g1483 Chr18 18409383 18409571 -
Vvi Vvi18g1484 Chr18 18417873 18418190 -
Vvi Vvi18g1485 Chr18 18427934 18428170 +
Gma Gma20g01619 Chr20 43267501 43271365 -
Lal Lal13g0090 Chr13 592227 594675 -
Lan Lan20g0107 Chr20 636505 639231 -
Gma Gma20g01618 Chr20 43261581 43266007 +
Gma Gma10g02098 Chr10 48511308 48514238 +
Gso Gso10g1962 Chr10 46636855 46640317 +
Lja Lja5g0792 Chr5 7320828 7323772 +
Lja Lja5g0791 Chr5 7311361 7313933 +