Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1474 ATGTCGATGCTCGATTCCTTCTTCAACAAGGGCTTCAAAGGTTCGAAATGTAAAACCCTACTGAAACTTACAATCCCTCGCATAAAGTTGTTAAGGAACAGGAGAGAGATTCAGATAAAGCAAATGCGCCGAGACATTGCTAAGCTTCTTGAGACTGGTCAAGAAGCTACTGCTCGAATCCGGGTGGAGCATATAATAAGAGAAGAGAATATGATGGCTGCTCAAGAGATCATTGAGCTGTACTGTGAGCTTATTTCTGTTCGCCTCCCAATCATTGAAACACAAAGGGAATGTCCCTTAGACCTGAAGGAAGCAATATCGAGTTTGTGTTTTGCTGCACCGAGATGTGCAGATCTACCAGAGCTGCTGCAGGTTCAAATGCTAATGGCCTCCAAATATGGGAAGGAATTTGTAGCGGCTGCAACTGAGCTCATGCCAGATTGTGGTGTTTGTCGCCAGTTGATTGAACTGCTTTCTGTCCGTGCTCCTTCTCCTGATGTGAAACTGAAGCTACTCAAGGAAATTGCTGAAGAGCATGGGCTAGATTGGGATCCAGCTGCCTCTGAAACTGAGTTTTTCAAGCCACATGAAGACTTGCTGAATGGCCCAACACAGTTTGTCAGTGGATCTAAATTGCCTCTTCCCAAGGAGAAACATGATGAATCATTGCACTCTGCCAGTGAACAAACACCCAAGGAAGAGGATTCTGATTCTGATGCTGGCTTCTTCGACCCATTAGATTTTCCTGAAGTTCCCAAGGCAACATTACAGCCAAGAGTGGATGCCGTCTCCCCCCCTGCAATGTTCCCACCTTCTCCATCTGCTCCTCACCATCAAGTTAATTATGAAGCACTGAGACATTCTGAAGTTAATGAAAACCTATTACGTCAACCACATCCACAACCTCAGGAAGCAGCGGAAGAAAGAACAGTGGCTGACCGAAATGAATCGCCTGATGTTTCAGTCAAAGCTATGGAAGATAAACAGTTTGTGCCATTCATTTCTCGCCCGATATTGGCTTCTGCATCATTTTCAGCAAGGCAAAATAATCCACCTCCACCTCCCAATCTCTCAAGAACCAAAACTGAGGCCGATATTGATTTGCAGGATGTATTGGCTGCTGCTCAGGTGGCTGCAGAAAGTGCTGAGCGGGCTGCTGCAGCAGCCCGCTCAGCAGCTAGCCTTGCACAGGTCAGAATTGCTGAAATCATGAAGAAAAATGATCAGGTCCTTGATAGTAGCTGTGAGAATCCATTCCATACTGATACATCTGATCAATCACCTACAACAGAAAAGCCACATGTCGATCATCACAACTCTCTGGGTGATTCTGATGGTGTTTCAAATCCCTTGGATGCTCATCAAGACCCTGAGAATTACCAGGCATCAGAGGCATTGAATCTTCCTTCATATGACAGAGACAAGGTGGGTATTGATTCCTCACCATCCGATGATCATGTGATTGAAGACAAGCCTGCTCATCACCAACCTCAGAGATTGCCCTCCATGGACGACGACTCATATTTTTCGTACCCAAACTTATTCACCTCACAGGGATCAAATCTTGGATCTGGTGTTCATTCGTTTACGGATACTTCCCGATCCACTCATGAGCACTGA 1620 0.4562 MSMLDSFFNKGFKGSKCKTLLKLTIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEIIELYCELISVRLPIIETQRECPLDLKEAISSLCFAAPRCADLPELLQVQMLMASKYGKEFVAAATELMPDCGVCRQLIELLSVRAPSPDVKLKLLKEIAEEHGLDWDPAASETEFFKPHEDLLNGPTQFVSGSKLPLPKEKHDESLHSASEQTPKEEDSDSDAGFFDPLDFPEVPKATLQPRVDAVSPPAMFPPSPSAPHHQVNYEALRHSEVNENLLRQPHPQPQEAAEERTVADRNESPDVSVKAMEDKQFVPFISRPILASASFSARQNNPPPPPNLSRTKTEADIDLQDVLAAAQVAAESAERAAAAARSAASLAQVRIAEIMKKNDQVLDSSCENPFHTDTSDQSPTTEKPHVDHHNSLGDSDGVSNPLDAHQDPENYQASEALNLPSYDRDKVGIDSSPSDDHVIEDKPAHHQPQRLPSMDDDSYFSYPNLFTSQGSNLGSGVHSFTDTSRSTHEH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1474 539 MobiDBLite consensus disorder prediction 509 531 - -
Vvi18g1474 539 Coils Coil 32 59 - -
Vvi18g1474 539 MobiDBLite consensus disorder prediction 427 441 - -
Vvi18g1474 539 MobiDBLite consensus disorder prediction 204 241 - -
Vvi18g1474 539 FunFam IST1-like protein isoform A 6 192 - -
Vvi18g1474 539 MobiDBLite consensus disorder prediction 477 501 - -
Vvi18g1474 539 MobiDBLite consensus disorder prediction 213 239 - -
Vvi18g1474 539 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Vvi18g1474 539 MobiDBLite consensus disorder prediction 414 539 - -
Vvi18g1474 539 Gene3D - 5 192 IPR042277 -
Vvi18g1474 539 PANTHER IST1 FAMILY MEMBER 16 516 IPR005061 GO:0015031
Vvi18g1474 539 Coils Coil 372 392 - -
Vvi18g1474 539 MobiDBLite consensus disorder prediction 296 318 - -
Vvi18g1474 539 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1474 Vvi-Chr18 18227498 18232005 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1474 - - vvi:100245921 1031.55