Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04232 ATGAGTGATCCAAATCCTCCTCATGACAGTAGTGACGAAGAAAATGATGATGTTTTCATTGATGAGTCTGATATCATCCGTGAAGTTGCCTCCGACGATGAAGTTCTTCCCGATGCAGATGGTGACGATGGTGGCCCTCCAGGCGGCTCAGGTGGCCCTGCAGacgaagatgatgatgattctgatCACACATTCACTGGTCATTCTGGGGAATTATATTCAGTTGCCTGCAGCCCAACAGATACGGCACTGGTTGCAACCGGAGGTGGTGACGACAGAGGATTTCTCTGGAAGATCAATAATGGAGAGTGGGCTGCTGAGCTTAAAGGCCATGAAGAATCTGTGTCTAGTTTAGGTTTTAGCCATGATGGAACGTTTCTGGCATCAGGAGGTCTTGATGGAACTATTAAAATATGGGATGCATCTGGAAATATGAAGGGTGAACTTGAGGGTGCTGGAGGGGGCATTGAGTGGCTCAGGTGGCATCCAAGAGGAAACATACTCATGGCTGGTTTTGAAGAATCCCCCTCAGTTTGGATGTGGAATGCTAATAATTTGGCCCTCCTTATGTCATTTGATGGCCATGCTAGTAAAGTGACTTGTGGTGATTTTACTCCCGATGGGAGAATAATATGCACTGGTTCTGACGATGCAACCTTGAGGATATGGAACCCAAAGACTGGAGAAAGCATTCATGTTGTGCGAGGTCATCCATACCACACCGAGGGATTAACATGTTTAGCAATAAATCCAGCTTCAACTACTGCTCTTACTGGTTCCCAGGATGGATCTGTTCATATTGTGAATATCACTACAGGAAGAGTTGTTAGTACCCTGCCTTCTCATTCAAGTTCCATCGAGTGTGTTGGGTTCGCACCAAGCCTACCAAACGCACCAAGTTCCTGGGCTGCAATTGGAGGCTTGGATAAAATGATCATCTGGGATTTAGAGCACTCCTTAGTCCGAAGCACTTGTGAGCACGAGTATGGAGTGACATGTTTAATATGGCTTGGGACATCGTATGTGGCTACTGGTTCTAATGATGGACTTGTTAGAATATGGGACAGTCGGTCGGGTGAGTGTGTCAGAACATTCAGAGGGCACTCTGAAAACATTCAATCTCTTTCTTTGTCTGCTAATGGCGAGTACCTTGTTTCGGCTTCTATGGATCATACAGCTCGTGTTTTTGATGTTAAAGGATTCCATTAA 1209 0.45 MSDPNPPHDSSDEENDDVFIDESDIIREVASDDEVLPDADGDDGGPPGGSGGPADEDDDDSDHTFTGHSGELYSVACSPTDTALVATGGGDDRGFLWKINNGEWAAELKGHEESVSSLGFSHDGTFLASGGLDGTIKIWDASGNMKGELEGAGGGIEWLRWHPRGNILMAGFEESPSVWMWNANNLALLMSFDGHASKVTCGDFTPDGRIICTGSDDATLRIWNPKTGESIHVVRGHPYHTEGLTCLAINPASTTALTGSQDGSVHIVNITTGRVVSTLPSHSSSIECVGFAPSLPNAPSSWAAIGGLDKMIIWDLEHSLVRSTCEHEYGVTCLIWLGTSYVATGSNDGLVRIWDSRSGECVRTFRGHSENIQSLSLSANGEYLVSASMDHTARVFDVKGFH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04232 402 MobiDBLite consensus disorder prediction 1 72 - -
Tsu01g04232 402 Gene3D - 58 400 IPR015943 GO:0005515
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 360 - -
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 140 IPR001680 GO:0005515
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Tsu01g04232 402 ProSitePatterns Trp-Asp (WD) repeats signature. 342 356 IPR019775 -
Tsu01g04232 402 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Tsu01g04232 402 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Tsu01g04232 402 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 402 IPR001680 GO:0005515
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 140 - -
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 229 - -
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Tsu01g04232 402 Pfam WD domain, G-beta repeat 63 93 IPR001680 GO:0005515
Tsu01g04232 402 Pfam WD domain, G-beta repeat 359 397 IPR001680 GO:0005515
Tsu01g04232 402 Pfam WD domain, G-beta repeat 324 355 IPR001680 GO:0005515
Tsu01g04232 402 Pfam WD domain, G-beta repeat 107 140 IPR001680 GO:0005515
Tsu01g04232 402 Pfam WD domain, G-beta repeat 229 267 IPR001680 GO:0005515
Tsu01g04232 402 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 107 IPR001680 GO:0005515
Tsu01g04232 402 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 2 400 - -
Tsu01g04232 402 SMART WD40_4 101 140 IPR001680 GO:0005515
Tsu01g04232 402 SMART WD40_4 358 397 IPR001680 GO:0005515
Tsu01g04232 402 SMART WD40_4 142 182 IPR001680 GO:0005515
Tsu01g04232 402 SMART WD40_4 272 315 IPR001680 GO:0005515
Tsu01g04232 402 SMART WD40_4 185 224 IPR001680 GO:0005515
Tsu01g04232 402 SMART WD40_4 227 269 IPR001680 GO:0005515
Tsu01g04232 402 SMART WD40_4 317 355 IPR001680 GO:0005515
Tsu01g04232 402 SMART WD40_4 58 98 IPR001680 GO:0005515
Tsu01g04232 402 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 2 400 - -
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 364 IPR001680 GO:0005515
Tsu01g04232 402 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 59 402 IPR011047 -
Tsu01g04232 402 CDD WD40 63 397 - -
Tsu01g04232 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04232 Tsu-Chr1 50185411 50192326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04232 182 401 Miscellaneous Gene Families AT5G08390 25.000 5.08e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04232 K24725 - gmx:100790414 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04232 01 50185411 50192326 Tsu01g04232 01 50185411 50192326 ECH