Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0232 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g02247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0233 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0234 Acco11g1462 . Accr9g00974 . . . . . . . . . . . Alju09g1462 . . . . Apr2g1308 . . Bach4g00019 . Bisa11g0793 . Bva08g00025 Bva11g02249 . Car06g00406 . . Dere09g0045 . . . . . Glsi05g2228 . . . Gma05g02141 . . . . . . . . . Lal16g1131 . . . . . . . Lapu3g03694 . Lasa7g04924 . Lele49g0776 Lele50g0815 Lele51g0801 Lele52g0803 . . . . Lja4g0303 Lja4g0303 . Mal7g5085 Mepo2g04768 . Mesa13g00349 . Mibi12g1240 . . Mtr8g3589 . . Phco4g03424 . Prci10g1250 . . . Pste3g00728 . . . . . Pumo6g00369 . Pvu2g3102 . Rops2g00415 . Seca12g06629 . Spst3g00971 . . . Sto6g3077 . . Tpr3g0523 Trre7g05609 . . Tsu02g00332 Vian1g03940 . Vifa6g03737 . Vimu11g04567 . Viun3g00420 . Vivi5g06105 . . .
Vvi2g0235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0236 Acco11g1460 . Accr9g00976 . . . . . . Aev03g3179 . Ahy13g2651 . Aip03g02984 Alju09g1460 . . . . Apr2g1309 . . Bach4g00018 . Bisa11g0792 . Bva08g00024 Bva11g02250 . Car06g00405 . . Dere09g0043 . . Dod04g2867 Enph13g1524 . Glsi05g2229 . . . Gma05g02142 Gma08g00249 . . . . . . Lal23g0524 . . . . . . . . . Lapu3g03695 . Lasa7g04928 . Lele49g0779 Lele50g0817 Lele51g0803 Lele52g0805 . . . . Lja4g0302 Lja4g0302 . Mal7g5086 Mepo2g04769 . Mesa13g00348 . Mibi12g1237 . . Mtr8g3590 . . Phco4g03425 . Prci10g1255 . . . Pste3g00725 . . . . . Pumo6g00367 . Pvu2g3103 . Rops2g00413 . Seca12g06635 . Spst3g00970 . . . Sto6g3076 . . Tpr3g0522 Trre7g05610 . . Tsu02g00331 Vian1g03941 . Vifa6g03739 . Vimu11g04568 . Viun3g00418 . Vivi5g06109 . . .
Vvi2g0237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0238 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0241 . . . . . . . . . Aev03g3180 . Ahy13g2650 . Aip03g02983 . . . . . Apr2g1310 . . . . . . . Bva11g02251 . Car06g00404 . . . . . Dod04g2868 . . . . . . Gma05g02143 Gma08g00250 . . . . . . Lal23g0525 . Lal16g1130 . . . . . . . Lapu3g03696 . . . . . . . . . . . Lja4g0301 Lja4g0301 . Mal7g5087 Mepo2g04770 . Mesa13g00347 . . . . Mtr8g3591 Phac2g04529 . Phco4g03426 . . . . Psa7g0525 Pste3g00720 . . . . . Pumo6g00365 . Pvu2g3104 . Rops2g00412 . Seca12g06636 . Spst3g00969 . . . . . . Tpr3g0521 Trre7g05611 . . Tsu02g00330 Vian1g03942 . Vifa6g03741 . Vimu11g04569 . Viun3g00417 . Vivi5g06112 . . .
   
Previous Page 187 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0232 Chr2 1919757 1929083 -
Bva Bva11g02247 Chr11 18126268 18134066 +
Vvi Vvi2g0233 Chr2 1930677 1931362 +
Vvi Vvi2g0234 Chr2 1935384 1939399 +
Acco Acco11g1462 Chr11 29176430 29181039 -
Accr Accr9g00974 Chr9 11393460 11398090 +
Alju Alju09g1462 Chr09 38631416 38641082 -
Apr Apr2g1308 Chr2 19251459 19256352 +
Bach Bach4g00019 Chr4 170405 173816 -
Bisa Bisa11g0793 Chr11 22965373 22970508 -
Bva Bva08g00025 Chr08 138215 141807 -
Bva Bva11g02249 Chr11 18136673 18140792 +
Car Car06g00406 Chr06 4251350 4256379 -
Dere Dere09g0045 Chr09 3353652 3359595 -
Glsi Glsi05g2228 Chr05 68458704 68467784 +
Gma Gma05g02141 Chr05 42557691 42562748 +
Lal Lal16g1131 Chr16 7679438 7686009 -
Lapu Lapu3g03694 Chr3 60367390 60372344 +
Lasa Lasa7g04924 Chr7 695228287 695232364 +
Lele Lele49g0776 Chr49 4709494 4713342 +
Lele Lele50g0815 Chr50 5029676 5033503 +
Lele Lele51g0801 Chr51 4833509 4837338 +
Lele Lele52g0803 Chr52 5090540 5094870 +
Lja Lja4g0303 Chr4 2451173 2456262 -
Lja Lja4g0303 Chr4 2451173 2456262 -
Mal Mal7g5085 Chr7 119977511 119981342 +
Mepo Mepo2g04768 Chr2 55921071 55926324 +
Mesa Mesa13g00349 Chr13 4114748 4119088 -
Mibi Mibi12g1240 Chr12 28003511 28010145 -
Mtr Mtr8g3589 Chr8 46472750 46477726 +
Phco Phco4g03424 Chr4 54465671 54470538 +
Prci Prci10g1250 Chr10 8240944 8245565 +
Pste Pste3g00728 Chr3 4601558 4602571 -
Pumo Pumo6g00369 Chr6 4799511 4804573 -
Pvu Pvu2g3102 Chr2 46368696 46374844 +
Rops Rops2g00415 Chr2 6120663 6125590 -
Seca Seca12g06629 Chr12 158333383 158334789 +
Spst Spst3g00971 Chr3 13189900 13195194 -
Sto Sto6g3077 Chr6 37774171 37779121 -
Tpr Tpr3g0523 Chr3 5273747 5279106 -
Trre Trre7g05609 Chr7 61545049 61549805 +
Tsu Tsu02g00332 Chr02 2814622 2819709 -
Vian Vian1g03940 Chr1 62428994 62433549 +
Vifa Vifa6g03737 Chr6 1229023531 1229028263 +
Vimu Vimu11g04567 Chr11 66368119 66372744 +
Viun Viun3g00420 Chr3 2533467 2538264 -
Vivi Vivi5g06105 Chr5 166209541 166214457 +
Vvi Vvi2g0235 Chr2 1943329 1943906 -
Vvi Vvi2g0236 Chr2 1944138 1946038 +
Acco Acco11g1460 Chr11 29156118 29157918 -
Accr Accr9g00976 Chr9 11409692 11411524 +
Aev Aev03g3179 Chr03 30182792 30184884 +
Ahy Ahy13g2651 Chr13 93553927 93556497 -
Aip Aip03g02984 Chr03 86543758 86546322 -
Alju Alju09g1460 Chr09 38617134 38618924 -
Apr Apr2g1309 Chr2 19260953 19263646 +
Bach Bach4g00018 Chr4 166484 168669 -
Bisa Bisa11g0792 Chr11 22956483 22958360 -
Bva Bva08g00024 Chr08 134935 136516 -
Bva Bva11g02250 Chr11 18142711 18144598 +
Car Car06g00405 Chr06 4236260 4239301 -
Dere Dere09g0043 Chr09 3349333 3351078 -
Dod Dod04g2867 Chr04 52537712 52540853 +
Enph Enph13g1524 Chr13 20768226 20770682 +
Glsi Glsi05g2229 Chr05 68471175 68472711 +
Gma Gma05g02142 Chr05 42568888 42571384 +
Gma Gma08g00249 Chr08 2115970 2118021 +
Lal Lal23g0524 Chr23 8030586 8036105 +
Lapu Lapu3g03695 Chr3 60378658 60381826 +
Lasa Lasa7g04928 Chr7 695324953 695326986 +
Lele Lele49g0779 Chr49 4723157 4724908 +
Lele Lele50g0817 Chr50 5042231 5044838 +
Lele Lele51g0803 Chr51 4844911 4846681 +
Lele Lele52g0805 Chr52 5104083 5105872 +
Lja Lja4g0302 Chr4 2437389 2440317 -
Lja Lja4g0302 Chr4 2437389 2440317 -
Mal Mal7g5086 Chr7 119994431 119999356 +
Mepo Mepo2g04769 Chr2 55936699 55940719 +
Mesa Mesa13g00348 Chr13 4092360 4098366 -
Mibi Mibi12g1237 Chr12 27982724 27985882 -
Mtr Mtr8g3590 Chr8 46491077 46495017 +
Phco Phco4g03425 Chr4 54478011 54480151 +
Prci Prci10g1255 Chr10 8267778 8270193 +
Pste Pste3g00725 Chr3 4584708 4587137 -
Pumo Pumo6g00367 Chr6 4790901 4792442 -
Pvu Pvu2g3103 Chr2 46383281 46386641 +
Rops Rops2g00413 Chr2 6082103 6085064 -
Seca Seca12g06635 Chr12 158352461 158353229 +
Spst Spst3g00970 Chr3 13183113 13185239 -
Sto Sto6g3076 Chr6 37765441 37767233 -
Tpr Tpr3g0522 Chr3 5260022 5264504 -
Trre Trre7g05610 Chr7 61573735 61576937 +
Tsu Tsu02g00331 Chr02 2799136 2803714 -
Vian Vian1g03941 Chr1 62442195 62444330 +
Vifa Vifa6g03739 Chr6 1229951666 1229953770 +
Vimu Vimu11g04568 Chr11 66380361 66382489 +
Viun Viun3g00418 Chr3 2524020 2527068 -
Vivi Vivi5g06109 Chr5 166230608 166234403 +
Vvi Vvi2g0237 Chr2 1947974 1953785 +
Vvi Vvi2g0238 Chr2 1964782 1965763 +
Vvi Vvi2g0239 Chr2 1969470 1970524 -
Vvi Vvi2g0240 Chr2 1972430 1974967 +
Vvi Vvi2g0241 Chr2 1999314 2003316 -
Aev Aev03g3180 Chr03 30189442 30192713 -
Ahy Ahy13g2650 Chr13 93543791 93547555 +
Aip Aip03g02983 Chr03 86529395 86533157 +
Apr Apr2g1310 Chr2 19269863 19274315 -
Bva Bva11g02251 Chr11 18145443 18149866 -
Car Car06g00404 Chr06 4229441 4233431 +
Dod Dod04g2868 Chr04 52547645 52551990 -
Gma Gma05g02143 Chr05 42577809 42581457 -
Gma Gma08g00250 Chr08 2124112 2128580 -
Lal Lal23g0525 Chr23 8044037 8048371 -
Lal Lal16g1130 Chr16 7674844 7679244 +
Lapu Lapu3g03696 Chr3 60388235 60392914 -
Lja Lja4g0301 Chr4 2428777 2433219 +
Lja Lja4g0301 Chr4 2428777 2433219 +
Mal Mal7g5087 Chr7 120003838 120007801 -
Mepo Mepo2g04770 Chr2 55945773 55950410 -
Mesa Mesa13g00347 Chr13 4082917 4086738 +
Mtr Mtr8g3591 Chr8 46501301 46506010 -
Phac Phac2g04529 Chr2 43032129 43036934 -
Phco Phco4g03426 Chr4 54487115 54490798 -
Psa Psa7g0525 Chr7 35680348 35683697 -
Pste Pste3g00720 Chr3 4564978 4569425 +
Pumo Pumo6g00365 Chr6 4781076 4781774 +
Pvu Pvu2g3104 Chr2 46391021 46395508 -
Rops Rops2g00412 Chr2 6072369 6076758 +
Seca Seca12g06636 Chr12 158358413 158363767 -
Spst Spst3g00969 Chr3 13173010 13176570 +
Tpr Tpr3g0521 Chr3 5253373 5257649 +
Trre Trre7g05611 Chr7 61580783 61584022 -
Tsu Tsu02g00330 Chr02 2791536 2795649 +
Vian Vian1g03942 Chr1 62455833 62459419 -
Vifa Vifa6g03741 Chr6 1230062214 1230065620 -
Vimu Vimu11g04569 Chr11 66388087 66391990 -
Viun Viun3g00417 Chr3 2514989 2519011 +
Vivi Vivi5g06112 Chr5 166257734 166261873 -