Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1309 ATGCTTGAGACGGTTAAATACCTCATCGGGTCAACGGGTCCGAGCGGGTTCGGGTCAAAATCCACCGCCGAACAAGTCACTGAAACCTTCGCCGATCTCCGCTCCATCACCGCCATCATTACCGGCGCTACGTCTGGAATCGGAGCTGAAACGGCGCGTGTGTTGGCGAAGCGTGGGGCTCGGCTGGTGTTGCCGGCGCGTAGCATGAAAGCTGCGGAAGATGCAAAAGCTCGCATAGTGTCGGAGTGTCCTGCTTCGGAGATTATTGTGATGGCGCTTGATCTTAGTTCTCTCAATTCGGTTAGAAACTTCGTTGCTCGCTTCCACTCTCTCCGTTTGCCTCTCCACCTCCTCATAAACAATGCCGGAAAGTTTGCACATGAGCACGCTATATCCGAGGATGGAGTTGAAATGACATTCGCCACTAATTATTTGGGTCATTTTTTGTTAACAAAATTGTTACTGAACACGATGGTCGAAACGGCAAGGAATAGTCGGGTGCAGGGTCGGATTGTGAACGTGTCGTCTAGCATACACGGTTGGTTTTCCGGTGATGTGGTTCCATATCTGGCTCTTATAAGCAGCAATAAAAGCCATTACGACGCCACACGTGCTTATGCTCTTTCGAAGCTCGCCAACGTTTTCCACACTAAGGAACTTGCTCGTAGACTCCAGCTAATGGGGGCCAACGTGACTGTGAACTGTGTTCATCCCGGGATCGTCAGAACCAGACTCACCCGAGAGCGTGAGGGCTTGCTTACAGATTTAGTATTCTTCTTGGCTTCCAAGCTCTTAAAGACGATTCCTCAGGCAGCTGCAACAACATGTTATGTGGCAACCCATCCTAGGCTCTTCAATGTGTCCGGCAAGTACTTAGCTGACTGTAACGAAACTTGCACCTCAAAATTGGGATCCAACTCAACCGAAGCAGCAAGGTTATGGGCTGCTTCCGAATTCATGATTTCTAGGGGTCCAAAAGCAGCCTTTGACTTACTCAACCACCTTGAATTTTGA 1014 0.497 MLETVKYLIGSTGPSGFGSKSTAEQVTETFADLRSITAIITGATSGIGAETARVLAKRGARLVLPARSMKAAEDAKARIVSECPASEIIVMALDLSSLNSVRNFVARFHSLRLPLHLLINNAGKFAHEHAISEDGVEMTFATNYLGHFLLTKLLLNTMVETARNSRVQGRIVNVSSSIHGWFSGDVVPYLALISSNKSHYDATRAYALSKLANVFHTKELARRLQLMGANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKTIPQAAATTCYVATHPRLFNVSGKYLADCNETCTSKLGSNSTEAARLWAASEFMISRGPKAAFDLLNHLEF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1309 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Apr2g1309 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Apr2g1309 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Apr2g1309 337 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Apr2g1309 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Apr2g1309 337 Pfam short chain dehydrogenase 37 178 IPR002347 -
Apr2g1309 337 Gene3D - 22 323 - -
Apr2g1309 337 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 325 - -
Apr2g1309 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Apr2g1309 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Apr2g1309 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Apr2g1309 337 CDD retinol-DH_like_SDR_c_like 37 314 - -
Apr2g1309 337 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Apr2g1309 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 300 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1309 Apr-Chr2 19260953 19263646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1309 28 247 Acyl Lipid Metabolism Gene Families AT1G63380 28.444 3.42e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1309 - - gmx:100794347 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1309 2 19260953 19263646 Apr2g1309 2 19260953 19263646 ECH