Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0522 ATGCTCGAAACGGTTAAATACTTGATCGGATCGGCAGGTCCTAGTGGATTCGGGTCCAAATCAACCGCAGAACAAGTCACTGAAAACTGCGGCGATCTCCGCTCCATCACCGCCATAATCACAGGCGGTACTTCTGGAATCGGAGCGGAAACGGCGCGTGTTTTGGCATCGCGTGGTGCTAGGGTGATTCTTCCAGCGCGTAGCATAAAAAATGCGGAAGAAACAAGAGGTAGAATCGTAACGGAATTTCCTGAGGCGGAGATTATTGTTATGGCACTCGATCTCAGTTCTCTCAATTCTGTTACAAATTTTGTTACTCGCTTTCACTCCTTCGATTTTCCTCTCAATCTCCTCATAAACAATGCTGGAAAATTTGCAGAAAAGCATGCGATTTCCGAGGATGGAGTTGAAATGACCTTTGCCACTAATTATCTAGGTCATTTTGTGTTAACAAAGTTGTTGATGAAGAGGATGGTTGAAACGGCAAAGAGGACAGGAATAGAAGGGAGGATAGTGAACGTGTCGTCTGCTATACACAATTGGTTTACTGGCGACGTCATCTCCTATTTGTCTCTTATATGCCGCAACAAATTAAGCCACTATGATGCCACACGTGCTTATGCTCTTTCCAAACTTGCCAATGTCTTCCACACAAACGAGCTTGCCCGCAGACTCAAGCAAATGGATGCCAATGTGACCGTGAACTGCGTTCATCCAGGGGTCGTGAGAACCAGACTCACCAGAGAGCGTGAAGGCTTTCTTACAGATTTAGTTTTCTTTTTGGCTTCCAAGCTCTTAAAGACTATTCCTCAGGCAGCTGCAACAACATGCTATGTAGCAACCCACCCAAGGCTCTTCAATGTATCTGGCAAGTACTTTGCTGACTGCAACGAAGCCTCAACTTCCAAATTAGGATCCAACTCAACTGAAGCTGCAAGGTTATGGGCGGTTTCCGAACTCATGATTTCTAAGGGTCCAAAAGCTGCTTTTGACTTAATTAATCACCTTGAATTTTGA 1017 0.4513 MLETVKYLIGSAGPSGFGSKSTAEQVTENCGDLRSITAIITGGTSGIGAETARVLASRGARVILPARSIKNAEETRGRIVTEFPEAEIIVMALDLSSLNSVTNFVTRFHSFDFPLNLLINNAGKFAEKHAISEDGVEMTFATNYLGHFVLTKLLMKRMVETAKRTGIEGRIVNVSSAIHNWFTGDVISYLSLICRNKLSHYDATRAYALSKLANVFHTNELARRLKQMDANVTVNCVHPGVVRTRLTREREGFLTDLVFFLASKLLKTIPQAAATTCYVATHPRLFNVSGKYFADCNEASTSKLGSNSTEAARLWAVSELMISKGPKAAFDLINHLEF* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0522 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Tpr3g0522 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Tpr3g0522 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Tpr3g0522 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 296 IPR036291 -
Tpr3g0522 338 Gene3D - 22 325 - -
Tpr3g0522 338 CDD retinol-DH_like_SDR_c_like 37 315 - -
Tpr3g0522 338 Pfam short chain dehydrogenase 37 178 IPR002347 -
Tpr3g0522 338 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 327 - -
Tpr3g0522 338 PANTHER RETINOL DEHYDROGENASE 4 327 - -
Tpr3g0522 338 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Tpr3g0522 338 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Tpr3g0522 338 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Tpr3g0522 338 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Tpr3g0522 338 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0522 Tpr-Chr3 5260022 5264504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0522 33 158 Acyl Lipid Metabolism Gene Families AT3G06060 32.031 5.56e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0522 - - gmx:100794347 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0522 3 5260022 5264504 Tpr3g0522 3 5260022 5264504 ECH