Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04569 ATGAAAATTGTTTCGATTTCTGGATCAAGCTCAAAATTTGAAGATAACCAAGGTCAGCAAACATCCCATTTCCTCTTTTGTTTCTCTCATGGATTCGCCGTAACTGTTCCTGATTTGTGTGCTTTCAGATACCCTTTCCCCTTAATTGAAGTAAAACTCATCCGTTCATTTCAGAATTGTTTGTTCTGTAAGAAAGGAATCTGCTTGAGATTAGCTGTGGGGATTGGGGAAAGGTGGGAAATGGATGGGGGAGAGGATCAGTTTTATGATACTCGTGAGGAATTGTGTTCTGTCTCTGATGGGGGTTCGGATTGTTCAGAGTCAGATGAATCTAGTTCTGGTAACAACGGACATGTTACTAGGCACAAGGTTTGGGCAAAGGACCTTGGAAGTGTTAACCAGAGACGCCAGAATTTCTTGAGATGGATGGGTTTGGAGTCTGATTTGAATCATTCAACGAAGGGAGTGGAGTTTCAAGATCAACCTTGTGGGATTGACCGAATCACTGCTACAAGTGGGGCGGTTTTGAGGACTTCTCTTGCTGTTGAGGAGGGTCTTCCCTCTACCTCAAACCAGATTGTGTTGGATTCCTTGTCTGGTGAGGCTTCCGGTTCCCGAGAAAATCGCGAGAATTCGGCGTGTATGATAAGGAATTTGGATGATGGAACACAGTATATTGTGGATAAGCTGGGTCAGGATGGAACTCTTAGTACACTGCGTGTTTTGGGTTCGAACCAATTGATTAGCTTGGAGGAGTTTCAGAGAAATACCGGGCCTTCATCGATGGTTCGCAGACATTTGCAGAGAGATGCTGAAAACACAAGGTTGTTAGGTGTTGGAAAAAGAAAAATGAAGAAGGGTTGGCTAAAGAAACTGGATTCTATTGCTTGTTTTGTTAATAATCACGGGTTTGATGAAACTAAGTGCAAAGACTGTGATTCAGTGGATGGAAGTGGGATACAAAGAGTTCGAGTTCATTCTTATAGGAAGCGGTTTAAGGAACTTTCCTCCCTTTACACGGAACAGGAGTTTAAAGCACATAAGGGTGTTATTTTGACAATGAAATTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATGGTACGTGTGTGGAAGGTGGTTGAGGATGAGAGATCAAGTGAACTAGACATTCTGGACAATGATCCATCAAATATATATTTCAAAATAAATAATTTTTCATGTATTGCTCCCCTTGGTGTAGATAAAGAAAAATTAGTCAAAACGGAGAAGTTGAGAAGATCCCCGGAAGCAACCTGTGTGATTATCCCACCAAGGACCTTCCGTATATCGGCAAAACCTTTGCACGAATTCCAAGGTCACAGTGGTGACATTTTGGACCTTGCTTGGTCCAAAAGAGGGTTTCTACTGTCATCCTCTGTTGATAAGACAGTGCGCCTGTGGCATGTGGGAATTGATAGATGTCTTAGAGTTTTTCCCCACAATAATTATGTGACATGCGTCAATTTCAACCCCATCAATGATAATTTTTTCATCAGTGGCTCAATTGATGGAAAAGTGCGTATCTGGGAAGTTGTTCACAGTAGGGTTAGTGATTACATTGATATCAGAGAGATAGTCACAGCGGTGTGCTTCCGCCCTGATGGAAAGGGCACAATTGTGGGTACCATGGCAGGCAATTGCCGTTTCTACGATATCCAAGATAAACATCTGCAATTGGATGCTCAGTTGTGTTTACGAGGAAAGAAGAAGACATCAGGGAAAAGGATCACTGGCTTTCAGTTTTCACCAACTGACCCAAGCAAATTATTGGTTGCGTCTGCTGATTCACATGTCTGTATACTTTCTGGAGATGACATAATCTACAAATTCAAGGGCTTAAGAAGTGCAGGTCAGATGAATGCTTCCTTCACCACTGATGGGAAACATATCATCTCCGTAAGTGAGGATTCGAATGTATGTATCTGGAATTACAATGGCCATGATAGGAGTAATTCCAAAGCAAAGAAAATTTGGTCTTCAGAGAGTTTTCTCTCCCACAACGCAGCAATAGCTGTTCCTTGGTGTGGCATTGAGTCAATCCCAGGAACACTCTTATCACCGTCGCTAGGAGGGGATGCAAATCAGAGGTGTTCGCTGCCTTCGCCGGATTGTTTCTTCTTGAGTCGCGGATTTCTGTCAGAGTGGATCCCAAAGGTTTCTGCAACATGGCCTGAGGAGACACTTGTGGACTCATGTCAAACACAAACTGTTGTTTCTCCTACAATGTGTAAATCAGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCCCACTTGTGGGGCCAAGTAATTGTGACAGCAGGATGGGATGGATACATAAGAGTGTACCAGAATTATGGATTACCTGTTCGTGTCTGA 2400 0.4283 MKIVSISGSSSKFEDNQGQQTSHFLFCFSHGFAVTVPDLCAFRYPFPLIEVKLIRSFQNCLFCKKGICLRLAVGIGERWEMDGGEDQFYDTREELCSVSDGGSDCSESDESSSGNNGHVTRHKVWAKDLGSVNQRRQNFLRWMGLESDLNHSTKGVEFQDQPCGIDRITATSGAVLRTSLAVEEGLPSTSNQIVLDSLSGEASGSRENRENSACMIRNLDDGTQYIVDKLGQDGTLSTLRVLGSNQLISLEEFQRNTGPSSMVRRHLQRDAENTRLLGVGKRKMKKGWLKKLDSIACFVNNHGFDETKCKDCDSVDGSGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGEDGMVRVWKVVEDERSSELDILDNDPSNIYFKINNFSCIAPLGVDKEKLVKTEKLRRSPEATCVIIPPRTFRISAKPLHEFQGHSGDILDLAWSKRGFLLSSSVDKTVRLWHVGIDRCLRVFPHNNYVTCVNFNPINDNFFISGSIDGKVRIWEVVHSRVSDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYDIQDKHLQLDAQLCLRGKKKTSGKRITGFQFSPTDPSKLLVASADSHVCILSGDDIIYKFKGLRSAGQMNASFTTDGKHIISVSEDSNVCIWNYNGHDRSNSKAKKIWSSESFLSHNAAIAVPWCGIESIPGTLLSPSLGGDANQRCSLPSPDCFFLSRGFLSEWIPKVSATWPEETLVDSCQTQTVVSPTMCKSEYKFLRSACKGMSNSHLWGQVIVTAGWDGYIRVYQNYGLPVRV 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04569 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 488 IPR001680 GO:0005515
Vimu11g04569 799 Gene3D - 574 688 IPR015943 GO:0005515
Vimu11g04569 799 SMART WD40_4 523 562 IPR001680 GO:0005515
Vimu11g04569 799 SMART WD40_4 751 791 IPR001680 GO:0005515
Vimu11g04569 799 SMART WD40_4 614 654 IPR001680 GO:0005515
Vimu11g04569 799 SMART WD40_4 569 613 IPR001680 GO:0005515
Vimu11g04569 799 SMART WD40_4 337 376 IPR001680 GO:0005515
Vimu11g04569 799 SMART WD40_4 482 521 IPR001680 GO:0005515
Vimu11g04569 799 SMART WD40_4 441 479 IPR001680 GO:0005515
Vimu11g04569 799 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 377 - -
Vimu11g04569 799 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 522 - -
Vimu11g04569 799 Gene3D - 334 573 IPR015943 GO:0005515
Vimu11g04569 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 522 IPR001680 GO:0005515
Vimu11g04569 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 385 IPR001680 GO:0005515
Vimu11g04569 799 PANTHER WD REPEAT DOMAIN 44 84 796 IPR040324 -
Vimu11g04569 799 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 480 - -
Vimu11g04569 799 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Vimu11g04569 799 PRINTS G protein beta WD-40 repeat signature 508 522 IPR020472 -
Vimu11g04569 799 PRINTS G protein beta WD-40 repeat signature 466 480 IPR020472 -
Vimu11g04569 799 FunFam WD repeat-containing protein 44 isoform A 331 575 - -
Vimu11g04569 799 SUPERFAMILY WD40 repeat-like 338 790 IPR036322 GO:0005515
Vimu11g04569 799 Pfam WD domain, G-beta repeat 443 478 IPR001680 GO:0005515
Vimu11g04569 799 Pfam WD domain, G-beta repeat 484 520 IPR001680 GO:0005515
Vimu11g04569 799 Pfam WD domain, G-beta repeat 342 376 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04569 Vimu-Chr11 66388087 66391990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04569 450 642 Miscellaneous Gene Families AT5G08390 24.121 1.55e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04569 - - gmx:100788374 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04569 11 66388087 66391990 Vimu11g04569 11 66388087 66391990 ECH