Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02250 atgctggAGACGGTGAAATACTTGATGGGCTCGGCGGGACCTAGCGGCTATGGCTCCAAGTCCACTGCCGAACAAGTCACCCAAAGCTGTGGCCATCTCACCGCCATTATTACCGGCGCAACATCCGGAATCGGAGCCGAAACTGCTCGAGTATTAGCAAAGAGAGGTGCGAGGCTGATTCTACCGGGTCGAAGCCTGAAAGCTGCTGAAGAAGTAAAAGCTCGCATCCTATCCGAGTGTGGCCTCGCCCACTCTCACATCATTGTCATGCCTCTCGATCTTAGCTCTCTCACTTCAGTTACTAATTTCGTTGCTCACTTCCACTCCCTTCGTTTGCCTCTCAATCTTCTCATAAACAACGCCGGCAAATTTGCACATGAACACGCAATCTCCAAGGATGGATTTGAGATGACCTTTGCAACTAATTATCTGGGTCATTTTCTGTTGACAAAGTTGTTACTGAAGAAGATGGTTGAAACGGCGAAGGAGAGCAGAATCCAAGGGCGAATCGTGAACGTGTCCTCAAGCATACACGGCTGGTTTTCCGGCGATGTTATCCCATATCTTGACCTTATTACCCGCAACAAAAGCCAGTACGACGCCACGCGTGCTTATGCTCTTTCTAAGCTGGCCAACGTTCTGCACACCAAACACCTTGCTCTCCTACTCCAGCAAACGCAGGCGGACGTGACTGTAAATTGCGTTCATCCGGGGATTGTAAGGACCAGACTCACCAGAGAACGGGAAGGATTACTTACAGATTTAGTCTTCTTTTTGGGCTCCAAGTTGTTGAAGACGATTCCCCAGGCGGCTGCAACCACGTGTTACGTGGCGACTCACCCGAGGCTACTTAATGTGTCCGGCAAGTACTTTGCTGACTGTAACGAAGCTTCCAACTCAAAATTGGGATCCAACTCAACTCAAGCTGCAAGGTTATGGTCGGCATCTCAAATTATGATTTCCAGGTCTCCCATTCCGAATTCACTTTTTCATCCCACTCGACTCACTCTCAACGAATTTGACTTTGACTTTGAAgcggaaaatta 1046 0.4809 MLETVKYLMGSAGPSGYGSKSTAEQVTQSCGHLTAIITGATSGIGAETARVLAKRGARLILPGRSLKAAEEVKARILSECGLAHSHIIVMPLDLSSLTSVTNFVAHFHSLRLPLNLLINNAGKFAHEHAISKDGFEMTFATNYLGHFLLTKLLLKKMVETAKESRIQGRIVNVSSSIHGWFSGDVIPYLDLITRNKSQYDATRAYALSKLANVLHTKHLALLLQQTQADVTVNCVHPGIVRTRLTREREGLLTDLVFFLGSKLLKTIPQAAATTCYVATHPRLLNVSGKYFADCNEASNSKLGSNSTQAARLWSASQIMISRSPIPNSLFHPTRLTLNEFDFDFEAEN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02250 348 Pfam short chain dehydrogenase 34 177 IPR002347 -
Bva11g02250 348 Gene3D - 20 323 - -
Bva11g02250 348 PANTHER RETINOL DEHYDROGENASE 4 328 - -
Bva11g02250 348 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 328 - -
Bva11g02250 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 297 IPR036291 -
Bva11g02250 348 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Bva11g02250 348 PRINTS Glucose/ribitol dehydrogenase family signature 34 51 IPR002347 -
Bva11g02250 348 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Bva11g02250 348 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Bva11g02250 348 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Bva11g02250 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Bva11g02250 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Bva11g02250 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02250 Bva-Chr11 18142711 18144598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02250 17 246 Acyl Lipid Metabolism Gene Families AT3G46170 25.000 2.15e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02250 - - gmx:100794347 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02250 11 18142711 18144598 Bva11g02250 11 18142711 18144598 ECH