Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0043 ATGGTGGACACCCTGAAGCACCTGATGGGCTCTCCAGGCCCATCAGGGTTTGGCTCTAATTCTACCGCCGACCAAGTCACTGAAAACTCCTCTTCCCATCTCCCCTCTCTCACTGCCATCATCACCGGAGCAACGTCGGGAATAGGAGCAGAAACCGCCCGGGTTCTGGCGAAGCGAGGCGTGCGGTTGATTCTGCCAGCTCGAACCCTGAAAGCCGCCGAGGACGCTAAAGCCCGCATCCTCTCCGAGTCTCCCCACTCCCACATCATTGTTATGCCCCTCGATCTTAGTTCTCTCCAATCTGTTCGCACCTTCGTTTCCCACTTCCATTCACTCCGTTTACCTCTCCATCTTCTCATAAACAACGCCGGAAAGTTCGCGCATCATCACGCAATCTCCGAAGATGGATTTGAAATGACCTTTGCCACTAATTATCTAGGCCATTTTCTGTTGACAAGCTTGTTGTTGAACACAATGGTGGAAACGGCAGAGAAGACGGGGGTCCAAGGAAGGATCATCAACGTGTCTTCCAATGTACACGGCTGGTTTTCCGGCGACATTATTCAATATCTGGCTCTTATTACCCGCGAAAAAAGCCATTACGACGCCACAGGTGCTTATGCTCTGTCCAAGCTCGCCAACGTTTTGCACACCAAGCAACTTGCTCTCAGACTCCAGCAAATGGAGGCCAACGTGACCGTGAATTGCGTTCATCCGGGGATCGTGAGGACCAGACTCACCAGGGAACGTGAAGGCATACTTACAGATATAGCATTTTTTCTGGCTTCCAAACTCTTGAAAACTATTCCCCAGGCTGCTGCAACGACATGTTACGTGGCGACGCACCCGAGGGTATTAAATGTGTCCGGCAAGTACTTTGCTGACTGCAATGAAGCTTCCACCTCAAAATTAGGATCCAGTTCAATCGAAGCTGCAAGGTTATGGGCAGCTTCCGAATCCATGATCTCGAAGGGTCCCAAAGCTCTCCTTGATCTCCTCGATGACAGTGGATGA 1014 0.5118 MVDTLKHLMGSPGPSGFGSNSTADQVTENSSSHLPSLTAIITGATSGIGAETARVLAKRGVRLILPARTLKAAEDAKARILSESPHSHIIVMPLDLSSLQSVRTFVSHFHSLRLPLHLLINNAGKFAHHHAISEDGFEMTFATNYLGHFLLTSLLLNTMVETAEKTGVQGRIINVSSNVHGWFSGDIIQYLALITREKSHYDATGAYALSKLANVLHTKQLALRLQQMEANVTVNCVHPGIVRTRLTREREGILTDIAFFLASKLLKTIPQAAATTCYVATHPRVLNVSGKYFADCNEASTSKLGSSSIEAARLWAASESMISKGPKALLDLLDDSG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0043 337 CDD retinol-DH_like_SDR_c_like 38 315 - -
Dere09g0043 337 PANTHER RETINOL DEHYDROGENASE 14 322 - -
Dere09g0043 337 Pfam short chain dehydrogenase 186 250 IPR002347 -
Dere09g0043 337 Pfam short chain dehydrogenase 38 179 IPR002347 -
Dere09g0043 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 299 IPR036291 -
Dere09g0043 337 Gene3D - 22 325 - -
Dere09g0043 337 MobiDBLite consensus disorder prediction 1 29 - -
Dere09g0043 337 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Dere09g0043 337 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Dere09g0043 337 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Dere09g0043 337 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Dere09g0043 337 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Dere09g0043 337 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0043 Dere-ChrDere09 3349333 3351078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0043 33 248 Acyl Lipid Metabolism Gene Families AT1G63380 27.602 1.81e-10 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0043 09 3349333 3351078 Dere09g0043 09 3349333 3351078 ECH