Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03942 ATGGATGGGGGAGAGGATCAGTTTTATGATACTCGTGAGGAATTGTGCTCTGTCTCTGATGGGGGTTCGGATTGTTCAGAGTCAGATGAATCTAGTTCTGGTAATTACGGACATGTTACTAGGCACAAGGTTTGGGCAAAGGACCTTGGAAGTGTTAAGCAGAGACGCCAGAATTTCTTGAGATGGATGGGTTTGGAGTCTGATTTGAATTATTCAACGAAGGGAGTGGAGTTTCAAGATCAACCTTGTGGAATTGACCGAATCACTGCTACAAGTGGGGCGGTTTTGAGGACTTCTCTTGCTGTTGAGGAGGGTCTTCCCTCTACCTCAAACCAGATTGTGTTGGATTCCTTGTCTGGTGAGGCTTCGGGTTCCCGAGAAAATCGCGAGAATTCGGCGTGTATGATAAGGAATTTGGATGATGGAACACAGTATATCGTGGATAAGCTGGGTCAGGATGGAACTCTTAGTACACTGCGTGTTTTGGGTTCGAACCAATTGATTAGCTTGGAGGAGTTTCAGAGAAATACTGGGCCTTCATCGATGGTTCGCAGACATTTGCAGAGAGATGCTGAAAACACAAGGTTGTTAGGAGTTGGAAAAAGAAAAATGAAGAGGGGTTGGCTAAAGAAACTGGATTCTATTGCTTGTTTTGTTAATAATCACGGGCTTGATGAAACTAAGTGCAAAGACTGTGATTCAGTGGATGGAAGTGGGATACAAAGAGTTCGAGTTCATTCTTATAGGAAGCGGTTTAAGGAGCTTTCCTCCCTTTACACGGAACAGGAGTTTAAAGCACATAAGGGTGTTATTTTGACAATGAAATTCAGCCTTGATGGAAAGTATCTGGCTAGTGGTGGTGAAGATGGCATGGTACGTGTGTGGAAGGTGGTTGAGGATGAGAGATCAAGTGAACTGGACATTGTGGACAATGATCCATCAAATATATATTTCAAAATAAATAATTTTTCATGTATTGCTCCCCTTGGTGTAGATAAAGAAAAATTAGTCAAAACGGAGAAGTTGAGAAGATCCCCTGAAGCAACCTGTGTGATTATGCCACCAAGGACCTTCCGTATATCGGCAAAACCTTTGCACGAATTCCAAGGTCACAGTGGTGACATTTTGGACCTTGCTTGGTCCAAAAGAGGGTTTCTACTGTCATCCTCTGTTGATAAGACAGTGCGCCTATGGCATGTGGGAATTGATAGATGTCTTAGAGTTTTTCCACACAATAATTATGTGACATGCGTCAATTTCAACCCCATCAATGATAATTTTTTCATCAGTGGCTCAATTGATGGAAAAGTGCGCATCTGGGAAGTTGTTCACAGTAGGGTTAGTGATTACATTGATATCAGAGAGATAGTCACAGCCGTGTGCTTCCGCCCTGATGGAAAGGGCACAATTGTGGGTACCATGGCAGGCAATTGCCGTTTCTACGATATCCAAGATAAACATCTGCAATTGGATGCTCAGTTGTGTTTACGAGGAAAGAAGAAGACATCAGGGAAAAGGATCACTGGCTTTCAGTTTTCACCTACTGACCCAAGCAAATTATTGGTTGCGTCTGCTGATTCACATGTCTGTATACTTTCTGGAGATGACATAATCTACAAATTCAAGGGCTTAAGAAGTGCAGGTCAGATGAATGCTTCCTTCACCACTGATGGGAAACATATCATCTCCGTAAGTGAGGATTCGAATGTATGTATCTGGAATTACAATGGCCATGATAGGAGTAATTCCAAAGCAAAGAAAATTTGGTCTTCAGAGAGTTTTCTCTCCCACAACGCAGCAATCGCTGTTCCTTGGTGTGGCATTGAGTCAATCCCAGGAACACTCTTATCGCCATCACTAGGAGGGGATGCAAATCAGAAGTGTTCTCTGCCTTCGCCGGATTGTTTCTTCTTGAGTCGGGGATTTCTGTCAGAGTGGATCCCAAAGGTTTCTGCAACTTGGCCTGAGGAGACACTTGTGGACTCATGTCAAACACAAACTGTGGTTTCTCCTACAATGTGTAAATCAGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCCCACTTGTGGGGCCAAGTAATTGTGACAGCAGGATGGGATGGATACATAAGAGTGTACCAGAATTATGGATTACCTGTTCGTGGCTGA 2160 0.4333 MDGGEDQFYDTREELCSVSDGGSDCSESDESSSGNYGHVTRHKVWAKDLGSVKQRRQNFLRWMGLESDLNYSTKGVEFQDQPCGIDRITATSGAVLRTSLAVEEGLPSTSNQIVLDSLSGEASGSRENRENSACMIRNLDDGTQYIVDKLGQDGTLSTLRVLGSNQLISLEEFQRNTGPSSMVRRHLQRDAENTRLLGVGKRKMKRGWLKKLDSIACFVNNHGLDETKCKDCDSVDGSGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGEDGMVRVWKVVEDERSSELDIVDNDPSNIYFKINNFSCIAPLGVDKEKLVKTEKLRRSPEATCVIMPPRTFRISAKPLHEFQGHSGDILDLAWSKRGFLLSSSVDKTVRLWHVGIDRCLRVFPHNNYVTCVNFNPINDNFFISGSIDGKVRIWEVVHSRVSDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYDIQDKHLQLDAQLCLRGKKKTSGKRITGFQFSPTDPSKLLVASADSHVCILSGDDIIYKFKGLRSAGQMNASFTTDGKHIISVSEDSNVCIWNYNGHDRSNSKAKKIWSSESFLSHNAAIAVPWCGIESIPGTLLSPSLGGDANQKCSLPSPDCFFLSRGFLSEWIPKVSATWPEETLVDSCQTQTVVSPTMCKSEYKFLRSACKGMSNSHLWGQVIVTAGWDGYIRVYQNYGLPVRG 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03942 719 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Vian1g03942 719 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Vian1g03942 719 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Vian1g03942 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Vian1g03942 719 Gene3D - 256 492 IPR015943 GO:0005515
Vian1g03942 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 442 IPR001680 GO:0005515
Vian1g03942 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Vian1g03942 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Vian1g03942 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 408 IPR001680 GO:0005515
Vian1g03942 719 SMART WD40_4 534 574 IPR001680 GO:0005515
Vian1g03942 719 SMART WD40_4 361 399 IPR001680 GO:0005515
Vian1g03942 719 SMART WD40_4 671 711 IPR001680 GO:0005515
Vian1g03942 719 SMART WD40_4 489 533 IPR001680 GO:0005515
Vian1g03942 719 SMART WD40_4 402 441 IPR001680 GO:0005515
Vian1g03942 719 SMART WD40_4 443 482 IPR001680 GO:0005515
Vian1g03942 719 SMART WD40_4 257 296 IPR001680 GO:0005515
Vian1g03942 719 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Vian1g03942 719 Pfam WD domain, G-beta repeat 363 398 IPR001680 GO:0005515
Vian1g03942 719 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Vian1g03942 719 Gene3D - 496 713 IPR015943 GO:0005515
Vian1g03942 719 SUPERFAMILY WD40 repeat-like 258 710 IPR036322 GO:0005515
Vian1g03942 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 400 - -
Vian1g03942 719 FunFam WD repeat-containing protein 44 isoform A 251 495 - -
Vian1g03942 719 MobiDBLite consensus disorder prediction 21 36 - -
Vian1g03942 719 PANTHER WD REPEAT DOMAIN 44 5 716 IPR040324 -
Vian1g03942 719 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03942 Vian-Chr1 62455833 62459419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03942 370 562 Miscellaneous Gene Families AT5G08390 24.121 1.14e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03942 - - gmx:100788374 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03942 1 62455833 62459419 Vian1g03942 1 62455833 62459419 ECH