Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03739 ATGCTCGAAACGATTAAATACCTCATCGGTTGGCCCGGTCCGAGCGGATTCGGATCCAAATCCACCGCCGAACAAGTCACCAAAACCAGCGGCGAGCTTCGTTCCGTAACCGCCATCATCACCGGTGGCACCTCAGGAATCGGAGCGGAAACAGCGCGTGTGCTGTCTTCGCGTGGCGCGAGAGTGATTCTACCTGCGCGTAGCATGAAAAACGCGGAGGAAACGAAAGATAGAATCGTAACGGAATGTCCTGAAGCGGAGATTATCGTTATGAAACTCGATCTCAGTTCTCTCAATTCCGTTTCGAATTTCGTTGATCGCTTTCACTCTCTCGGTTTCCCTCTCCATCTCCTCATAAACAATGCTGGAAAATTTGCAGAAGAGCGTGCGATTTCAGAAGATGGAGTTGAAATGACGTTCGCCACTAATTATCTAGGTCATTTTCTGTTAACAAAGTTGTTGATGAAGACCATGATTGAAACGGCGGAGAAGTCAGGGATACAAGGGAGGATAGTGAACGTAACTTCTGCCGTACACAAATGGTTTACGGATGACATCATCTCTTATTTGGCTCTTATAAGCCACAACAAAAGCCATTTCGATGCTACACGTGCTTATACTCTTTCCAAACTCGCCAACGTTTTGCACACCACAGAACTTGCTTGCAGACTCAAGCAAATGGATGCCAACGTAACTGTGAACTGCCTTCATCCGGGAGTTGTGAGAACCAGACTCACCAGAGAACGTGATGGTTTTCTTACAGATTTAGTTTTCTTTTTGGCTTCTAAGCTCTTAAAGACTCTTCCCCAGGCAGCTGCAACAACATGTTATGTGGCAACCCATCCAAGGCTCTTCAATGTATCCGGCAAGTACTTTATTGACTGCAACGAAGCCTCCAGTTCCAAATTGGGATCCAACTCAATTGAAGCTTCAAGGTTATGGGACTTTTCCGAACACATCATTTCTAAGGGTTCAAAAGCTGCCTTTGACCAATTTAATCATAATCACCTTGAATTTTGA 1020 0.4559 MLETIKYLIGWPGPSGFGSKSTAEQVTKTSGELRSVTAIITGGTSGIGAETARVLSSRGARVILPARSMKNAEETKDRIVTECPEAEIIVMKLDLSSLNSVSNFVDRFHSLGFPLHLLINNAGKFAEERAISEDGVEMTFATNYLGHFLLTKLLMKTMIETAEKSGIQGRIVNVTSAVHKWFTDDIISYLALISHNKSHFDATRAYTLSKLANVLHTTELACRLKQMDANVTVNCLHPGVVRTRLTRERDGFLTDLVFFLASKLLKTLPQAAATTCYVATHPRLFNVSGKYFIDCNEASSSKLGSNSIEASRLWDFSEHIISKGSKAAFDQFNHNHLEF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03739 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 295 IPR036291 -
Vifa6g03739 339 CDD retinol-DH_like_SDR_c_like 37 314 - -
Vifa6g03739 339 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vifa6g03739 339 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Vifa6g03739 339 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vifa6g03739 339 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Vifa6g03739 339 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Vifa6g03739 339 Pfam short chain dehydrogenase 37 178 IPR002347 -
Vifa6g03739 339 Gene3D - 23 324 - -
Vifa6g03739 339 PANTHER RETINOL DEHYDROGENASE 14 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03739 Vifa-Chr6 1229951666 1229953770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03739 33 158 Acyl Lipid Metabolism Gene Families AT3G06060 32.812 4.39e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03739 - - gmx:100794347 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03739 6 1229951666 1229953770 Vifa6g03739 6 1229951666 1229953770 ECH