Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0521 ATGGTGGGGAATTGGAAAAGGGTTGTGGAATTGGTGGATATGGAATTGGAAGTTGATGAGGATCAATTCTATGATACTTGTGAGGATTTGTGTTCTGTTTCTGATGAGGGTTTTGATTATTGTTTAGAATCTTATTCTGGTGGTAGTAGTAGTAATGATTATGTTACTAGGTTCAATTTTTGGACTAAAAACCTTGAAAGTGTTCATCATAGACGAGTCAATTTTTTAAGATGGATGGGTTTGGAGTATGATGAGAATTCAATTGATGGAGATGAGTTTGGAGAAGATTCATCTCGTGGAGTTGACCGAATCACTTCAACTAGTGGGGATGGTTTGAGAACTGTAAATCAGATTGTGCTGGATTCATCATCAAATGAGGCATCTAGGTTGTTAGAAAATTGCGGTGATGGTACCGAGAATTTGGCATGTATGATAAAGAATTTGGATGATGGAACACGGTATGTTGTAGATAAATTGGATCAAGATGGAACGCTTAATACCCTGCGTGTTCTCGGTTCGAACCAATTGATTAGTTTGGATGAGTTTCATAAAAATATTGGGCCGTCATCTTTTGTTCGTAGACATTTGCAGAGAGATGCTGAAAACACTAGATTGTTGGGTGTTGCTAAAAAGAAGATGAAGAAAGGTTGGTTAAGCAAACTGGATTCTATTGCTTGTTTTTATCATCATAATCAAGAGTTTGATGAAACTTGCTGCAATAAAGACTTAGACTCTAGGATACATAAAGTTCGTGTTCAGCCGCATAAGAAGCGAATTAAGGAGCTTTCCTCTCTTTATGCTGAACAAGAGTTTAAAGCACACAAAGGTGTTATTTTGACAATGAAGTTCAGTCTTGATGGAAAATATCTGGCTAGTGGCGGTGAAGATGGCATTGTGCGTGTGTGGAAGGTGATTGAGGATGTAAGATCGAATGAATTGAACATTCTAGACAGTGATCCATCCAATATATATTTCAAAATGAATGAATTTACTGGTAGTGTGGCTCCCTTTGATGTAGATAAAGAAAAATTAGTCAAAACAGAGAAGTTGAAGAGATCATCTCCTTCAACTTGTGTGGTTATCCCACCAAAGACCTTCCGCATATCGGCAAAACCTTTGCATGAATTCCATGGGCATAATGATGACATTTTAGACCTTGCATGGTCCAAATCAGGGTTTCTATTGTCATCCTCTGTTGATAAGACAGTGCGCTTATGGCAAGTAGGGATCAACAAATGTCTTCGAGTTTTCTCTCACAATAATTATGTGACGTGTGTGAATTTCAATCCTGTCAATGATAATGTTTTCATCAGTGGTTCAATTGATGGAAAGGTGCGCATATGGGAAGTTGTTCGCTGTCGGGTTGTTGATTACATTGATATCAGAGAGATAGTCACAGCCGTATGTTTCCGCCCTGATGGAAAGGGCACGATTGTGGGCACCATGGCAGGCAATTGCCGTTTTTATGATATCCTAGATAATCATATGAAAATTGATACTCAAATGTCGTTACAAGGAAAAAAGAAGACATCGGGGAAAAGGATAACTGGCTTTCAGTTTTCGCCCAGTGACCCGAGCAAATTGTTGGTCGCCTCTGCTGATTCCCATGTGTGTGTACTCTCTGGAGTTGATGTCATCTACAAATTCAAAGGCCTGAGAAGTGCAGGACGGATGCATGCTTCCTTCACATCCGACGGGAAACATATCGTTTCACTTAGCGAAGGTTCAAATGTTTGTATCTGGAATCACACTGGCCAGGATAGGAATACGTCCAAAGCAAAGCAGATTTTGTCTTCCGAGAGTTTTCTATCCCACAATGCAACAATCGCCATACCTTGGTGTGGCATTGAGTCAACGCCGTTGTCTCCTTCACTAGATGAAAACTTGATTCAGCGGTCATCCTTGTCTTCTCCCGATTGTTTCTTCATGGGTCGAGGATTTCTTTCCGAGTTAGTCCCAAAGGTTTCTGCTACATGGCCAGAGGAAACACTTCTCGATTCGGGGCAAACTGTTGTTTCTCCTACAATATGTAAATCAGAGTATAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCTCATTTGTGGGGCCAAGTGATTCTAACAGCAGGATCTGATGGATTCATAAAAGTGTACCAAAATTATGGCCTACCCGTTCGCGTTTGA 2169 0.4025 MVGNWKRVVELVDMELEVDEDQFYDTCEDLCSVSDEGFDYCLESYSGGSSSNDYVTRFNFWTKNLESVHHRRVNFLRWMGLEYDENSIDGDEFGEDSSRGVDRITSTSGDGLRTVNQIVLDSSSNEASRLLENCGDGTENLACMIKNLDDGTRYVVDKLDQDGTLNTLRVLGSNQLISLDEFHKNIGPSSFVRRHLQRDAENTRLLGVAKKKMKKGWLSKLDSIACFYHHNQEFDETCCNKDLDSRIHKVRVQPHKKRIKELSSLYAEQEFKAHKGVILTMKFSLDGKYLASGGEDGIVRVWKVIEDVRSNELNILDSDPSNIYFKMNEFTGSVAPFDVDKEKLVKTEKLKRSSPSTCVVIPPKTFRISAKPLHEFHGHNDDILDLAWSKSGFLLSSSVDKTVRLWQVGINKCLRVFSHNNYVTCVNFNPVNDNVFISGSIDGKVRIWEVVRCRVVDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYDILDNHMKIDTQMSLQGKKKTSGKRITGFQFSPSDPSKLLVASADSHVCVLSGVDVIYKFKGLRSAGRMHASFTSDGKHIVSLSEGSNVCIWNHTGQDRNTSKAKQILSSESFLSHNATIAIPWCGIESTPLSPSLDENLIQRSSLSSPDCFFMGRGFLSELVPKVSATWPEETLLDSGQTVVSPTICKSEYKFLRSACKGMSNSHLWGQVILTAGSDGFIKVYQNYGLPVRV* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0521 722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Tpr3g0521 722 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Tpr3g0521 722 PRINTS G protein beta WD-40 repeat signature 394 408 IPR020472 -
Tpr3g0521 722 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Tpr3g0521 722 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 450 IPR001680 GO:0005515
Tpr3g0521 722 Pfam WD domain, G-beta repeat 371 406 IPR001680 GO:0005515
Tpr3g0521 722 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Tpr3g0521 722 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
Tpr3g0521 722 Gene3D - 255 611 IPR015943 GO:0005515
Tpr3g0521 722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 408 - -
Tpr3g0521 722 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 16 722 - -
Tpr3g0521 722 PANTHER WD REPEAT DOMAIN 44 16 722 IPR040324 -
Tpr3g0521 722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 450 - -
Tpr3g0521 722 SUPERFAMILY WD40 repeat-like 265 713 IPR036322 GO:0005515
Tpr3g0521 722 SMART WD40_4 410 449 IPR001680 GO:0005515
Tpr3g0521 722 SMART WD40_4 264 303 IPR001680 GO:0005515
Tpr3g0521 722 SMART WD40_4 542 582 IPR001680 GO:0005515
Tpr3g0521 722 SMART WD40_4 497 541 IPR001680 GO:0005515
Tpr3g0521 722 SMART WD40_4 369 407 IPR001680 GO:0005515
Tpr3g0521 722 SMART WD40_4 452 490 IPR001680 GO:0005515
Tpr3g0521 722 SMART WD40_4 674 714 IPR001680 GO:0005515
Tpr3g0521 722 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 416 IPR001680 GO:0005515
Tpr3g0521 722 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 304 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0521 Tpr-Chr3 5253373 5257649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0521 245 461 Miscellaneous Gene Families AT5G08390 22.083 1.51e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0521 - - gmx:100788374 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0521 3 5253373 5257649 Tpr3g0521 3 5253373 5257649 ECH