Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06636 ATGGGAGAGGATGAGGATCAATTCTATGATACCCGTGATGAATTGTGTTCTGTCTCTGATGGGGGTTCAGATTGTTCAGAATTAGATGAATCTAGTTCTGGTGGTGGTTATGTTACTAGGTACCATGTTTGGGCAAAAACCCTTGAAAGCGTTCACCAGCGACGCCTCAATTTCCTAAGATGGATGGGTTTAGAGTCTGATGGGAATTCAATGGAGGGAGAGGAGTTGGAAGATCCATCTTGTGGTTGTGGAGTTGACCGAGTCACAGCAACCAGTGGAGCAGTGCTGAGAACTTTGGATTCTGTAGAGGGTCTTCCCTCAACCTCAGACCAGATTGTGTTGGATTCCTTGTCAAATGAGGCTTCAAACTCGCTAGAAAATAACGGTGTTACAGAGAATTTAGCATGTATGATAAAGAATTTGGATGATGGAACACAGTATATTGTGGATAGAGTGGGTCAGGATGGAACACTTAATCAACTGCGTGTTTTAGGTTCGAACCAATTGATTAGCTTGGAAGAGTTTCAGAGAAATACTGGGCCATCATCATTTATACGCAGACATTTGCAGAGAGATGCTGAAAACGCAAGATTGTTGAATGTTGCAAAAAAGAAAATGAAGAGGGGTTGGCTAAGGAAACTGGATTCTATGGCTTGTTTTCTTCATAATCAAGGGCTTGATGAAACATACTGCAAAGACTGCAATTCAGTTGATGGAACTGGGATACAAAGAGTTCGAGTTCATCCACATAGTAAGCGATTTAAGGAGCTTTCTTCGCTTTATACTGAACAGGAGTTTAAAGCACATAAGGGTGTTATTTTGACAATGAAGTTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATTGTACGTGTGTGGAAGGTGATTGAGAATGAAAGACCAAATGAATTGGACACTTTGGACAATGATCCATCAAACATATATTTCAAAATGAATAATTTTTCATGTGTAGTTCCCCTCGATGTAGATAAAGAGAAATTAATTAAAACAGAGAAGTTGAGGAGATCTTCTGATGCAACCTGTGTGATTATCCCTCCAAAGACCTTTCGCATATTGGAGAAACCTTTGCATGAATTCCACGGACATAGTGATGACATTTTGGACCTTGCATGGTCCAAAAGAGGGCAGTTTCTATTGTCATCCTCTGTTGATAAGACAGTGCGGCTATGGCAGGTAGGAGTCGACAGATGTCTTCGAGTTTTCTCTCACAATAATTATGTGACATGTGTCAATTTCAATCCCGTCAATGATAATTTCTTCATCAGTGGTTCAATTGATGGAAAAGTGCGCATCTGGGAAGTTGTTCGATGTCGGGTTAATGATTACATTGATATCAGAGAGATAGTCACAGCTGTGTGTTTCTACCCTGATGGAAAGGGCACAATTGTGGGTACCATGACAGGCAATTGTCAATTTTATGATATCCAAGATAATCATCTGCAATTGGATGCTCACTTGAGTTTACAAGGAAAAAAGAAGACATCAGGCAAAAGGATCACTGGCTTTCAGTTTTCACCAAGTGACCCAAGCAAATTGTTGGTTGCTTCTGCTGATTCACATGTTTGTATACTTTCTGGAGTTGATGTCATCTACAAATTCAAGGGCTTAAGAAGTGCAGGTCAAATGCATGCTTCCTTCACCTCTGATGGGAAACATATAATCTCAGTTAGTGAGGGTTCAAATGTTTGTATATGGAATTACACTGGCCAAGATAGGAGTACTTCCAAAGCAAAGAAGATTTGGTCTTCTGAGAGTTTTCTATCCCATAAAGCTGCAATTGCTATACCTTGGTGTGGCATTGAGTCAATCCCAGGAACACTCTTATCCCCATCACTGGGAGAAGATTTGAATCAGAAGTCATCTCTATCTTCTCCTGATTGTTTCTTCTTAACTCGCGGATTTCTATCAGAGTTAGTCCCAAAGGTTTCTGCAACATGGCCAGAGGAGACACTTCAGGACTCACATCAAACTGTTGTTTCACCTAGAATGTGTAAATCAGAGTACAAGTTTTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCTCACTTATGGGGCCAAGTAATTGTAACTGCAGGATGGGATGGTATCATAAGAGTGTACCAGAATTATGGGTTACCTGTTCGTGTTTGA 2163 0.4064 MGEDEDQFYDTRDELCSVSDGGSDCSELDESSSGGGYVTRYHVWAKTLESVHQRRLNFLRWMGLESDGNSMEGEELEDPSCGCGVDRVTATSGAVLRTLDSVEGLPSTSDQIVLDSLSNEASNSLENNGVTENLACMIKNLDDGTQYIVDRVGQDGTLNQLRVLGSNQLISLEEFQRNTGPSSFIRRHLQRDAENARLLNVAKKKMKRGWLRKLDSMACFLHNQGLDETYCKDCNSVDGTGIQRVRVHPHSKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGEDGIVRVWKVIENERPNELDTLDNDPSNIYFKMNNFSCVVPLDVDKEKLIKTEKLRRSSDATCVIIPPKTFRILEKPLHEFHGHSDDILDLAWSKRGQFLLSSSVDKTVRLWQVGVDRCLRVFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVRCRVNDYIDIREIVTAVCFYPDGKGTIVGTMTGNCQFYDIQDNHLQLDAHLSLQGKKKTSGKRITGFQFSPSDPSKLLVASADSHVCILSGVDVIYKFKGLRSAGQMHASFTSDGKHIISVSEGSNVCIWNYTGQDRSTSKAKKIWSSESFLSHKAAIAIPWCGIESIPGTLLSPSLGEDLNQKSSLSSPDCFFLTRGFLSELVPKVSATWPEETLQDSHQTVVSPRMCKSEYKFLRSACKGMSNSHLWGQVIVTAGWDGIIRVYQNYGLPVRV. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06636 720 SUPERFAMILY WD40 repeat-like 260 711 IPR036322 GO:0005515
Seca12g06636 720 Pfam WD domain, G-beta repeat 407 443 IPR001680 GO:0005515
Seca12g06636 720 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Seca12g06636 720 Pfam WD domain, G-beta repeat 365 401 IPR001680 GO:0005515
Seca12g06636 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 370 403 - -
Seca12g06636 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 299 - -
Seca12g06636 720 PANTHER WD REPEAT DOMAIN 44 3 717 IPR040324 -
Seca12g06636 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 411 IPR001680 GO:0005515
Seca12g06636 720 SMART WD40_4 405 444 IPR001680 GO:0005515
Seca12g06636 720 SMART WD40_4 672 712 IPR001680 GO:0005515
Seca12g06636 720 SMART WD40_4 363 402 IPR001680 GO:0005515
Seca12g06636 720 SMART WD40_4 259 298 IPR001680 GO:0005515
Seca12g06636 720 SMART WD40_4 492 536 IPR001680 GO:0005515
Seca12g06636 720 SMART WD40_4 446 485 IPR001680 GO:0005515
Seca12g06636 720 SMART WD40_4 537 577 IPR001680 GO:0005515
Seca12g06636 720 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Seca12g06636 720 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Seca12g06636 720 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Seca12g06636 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 445 - -
Seca12g06636 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Seca12g06636 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 445 IPR001680 GO:0005515
Seca12g06636 720 Gene3D - 257 501 IPR015943 GO:0005515
Seca12g06636 720 Gene3D - 502 714 IPR015943 GO:0005515
Seca12g06636 720 FunFam WD repeat-containing protein 44 isoform A 253 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06636 Seca-Chr12 158358413 158363767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06636 370 565 Miscellaneous Gene Families AT5G08390 25.373 3.85e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06636 - - gmx:100788374 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06636 12 158358413 158363767 Seca12g06636 12 158358413 158363767 ECH