Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03695 ATGATCGACACACTTAAATACCTTCTCGGCTCAGCCGGTCCAAGCGGCTTCGGCTCCAAATCCACCGCCGAACAAGTCACCGAAAACAGCGCCGATCTCCGCTCCGTCACCGCCATCATCACCGGTGCTACATCTGGAATCGGAGCTGAAACGGCGCGTGTGTTAGCGAAACGTGGAGCGAGGCTGATTCTGCCGGCGCGTAGCATGAAAGCTGCGGAAGACGCAAAAGCGCGTATCGTGTCAGAGTGTCCTGATTCGGAGATCATTGTTATGGCTCTTGATCTGAGTTCTCTCAATTCAGTTAGAAGCTTCGTAAATCAGTTCCACTCTCTCGGTTTGCCTCTCCATCTTCTCATAAACAACGCCGGAAAGTTTGCGCATGAACACGCTATATCTGAAGACGGAGTTGAAATGACCTTCGCCACTAATTACCTAGGTCATTTTCTGCTGACAAAGTTGTTGGTGAAGACGATGGCGGAAACGGCGAAGGAGACAGGAGTGCAGGGTCGGATAGTGAACGTGTCGTCCAGCATCCACGGGTGGTTTTCCGGCGATGCGATTTCGTATCTGGCCCTTATAAGCCGCAACAAAAGCCATTACGACGCCACACGTGCTTATGCTCTTTCGAAGCTCGCCAACGTTTTCCACACTAAGGAGCTTGCACGTAGACTCCAGCAAATGGGGGCCAACGTGACTGTGAACTGTGTTCATCCTGGGATTGTGAGAACCAGACTCACCAGAGAGCGTGAGGGATTACTCACAGATTTAGTGTTCTTTTTGGCTTCCAAGCTCTTAAAGACTATTCCTCAGGCAGCTGCTACAACATGTTATGTGGCAACTCATCCGAGGCTGTTCGATGTCTCTGGCAAATACTTTGCTGACTGCAACGAAACCTCAACCTCAAAATTGGGATCCAACTCAACTGAAGCATCAAGGTTATGGGCCACTTCTGAATTCATGATTTCTAGGGGTCCAAAAGCTGCCTTTGACCTACTCAAGCACCTTGAATTTTGA 1014 0.499 MIDTLKYLLGSAGPSGFGSKSTAEQVTENSADLRSVTAIITGATSGIGAETARVLAKRGARLILPARSMKAAEDAKARIVSECPDSEIIVMALDLSSLNSVRSFVNQFHSLGLPLHLLINNAGKFAHEHAISEDGVEMTFATNYLGHFLLTKLLVKTMAETAKETGVQGRIVNVSSSIHGWFSGDAISYLALISRNKSHYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKTIPQAAATTCYVATHPRLFDVSGKYFADCNETSTSKLGSNSTEASRLWATSEFMISRGPKAAFDLLKHLEF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03695 337 Gene3D - 22 323 - -
Lapu3g03695 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 295 IPR036291 -
Lapu3g03695 337 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lapu3g03695 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Lapu3g03695 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Lapu3g03695 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Lapu3g03695 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lapu3g03695 337 Pfam short chain dehydrogenase 37 178 IPR002347 -
Lapu3g03695 337 CDD retinol-DH_like_SDR_c_like 37 314 - -
Lapu3g03695 337 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Lapu3g03695 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Lapu3g03695 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Lapu3g03695 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03695 Lapu-Chr3 60378658 60381826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03695 28 247 Acyl Lipid Metabolism Gene Families AT1G63380 26.724 2.22e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03695 - - gmx:102670316 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03695 3 60378658 60381826 Lapu3g03695 3 60378658 60381826 ECH