Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05610 ATGCTCGAAACGGTTAAATACTTAATCGGATCGGCAGGTCCAAGCGGATTCGGGTCCAAATCAACCGCCGAACAAGTCACTGAAAGCTGCGGCGATCTCCGCTCCATCACCGCCATCATCACAGGCGGTACTTCTGGAATCGGAGCAGAAACGGCGCGTGTTTTGGCATCGCGTGGTGCGAGAGTGATTCTTCCGGCGCGTAGCATAAAAAATGCAGAAGAAACAAGAGGTAGAATCGTAACGGAATTTCCTGAGGCGGAGATTATTGTTATGGCACTCGATCTCAGTTCTCTCAATTCTGTTACAAATTTCGTTACTCGCTTTCACTCCTTCGATTTTCCTCTCAATCTCCTCATAAACAATGCTGGAAAATTTGCAGAAAAGCATGCGATTTCCGAGGATGGAGTTGAAATGACCTTTGCCACTAATTATTTAGGTCATTTTGTGTTAACAAAGTTGTTGATGAAGACGATGGTTGAAACGGCAAAGACGACAGGAATACAAGGGAGGATAGTGAACGTGTCGTCTTCTATACACAATTGGTTTACTGGCGACGTCATCTCCTATTTGTCTCTTATATGCCGCAACAAATTAAGCCACTATGATGCCACACGTGCTTATGCTCTTTCCAAACTCGCCAATGTATTCCACACCAATGAACTTGCACGCAGACTCAAGCAAATGGATGCCAACGTGACTGTGAACTGTGTTCATCCGGGCGTTGTGAGAACCAGACTCACCAGAGAGCGTGAAGGCTTTCTGACAGATTTAGTTTTCTTTTTGGCTTCCAAGCTCTTAAAGACTATTCCTCAGGCAGCTGCAACAACATGTTATGTAGCAACCCACCCAAGGCTCTTCAATGTGTCCGGCAAATACTTTGCTGACTGCAACGAAGCCTCAACTTCCAAATTGGGATCCAACTCAACTGAAGCTGCAAGGTTATGGGCGGTTTCCGAACTCATGATTTCTAAGGGTCCAAAAGCTGCCTTGGACTTAATTAATCACCTTGAATTTTGA 1017 0.4533 MLETVKYLIGSAGPSGFGSKSTAEQVTESCGDLRSITAIITGGTSGIGAETARVLASRGARVILPARSIKNAEETRGRIVTEFPEAEIIVMALDLSSLNSVTNFVTRFHSFDFPLNLLINNAGKFAEKHAISEDGVEMTFATNYLGHFVLTKLLMKTMVETAKTTGIQGRIVNVSSSIHNWFTGDVISYLSLICRNKLSHYDATRAYALSKLANVFHTNELARRLKQMDANVTVNCVHPGVVRTRLTREREGFLTDLVFFLASKLLKTIPQAAATTCYVATHPRLFNVSGKYFADCNEASTSKLGSNSTEAARLWAVSELMISKGPKAALDLINHLEF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05610 338 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Trre7g05610 338 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Trre7g05610 338 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Trre7g05610 338 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Trre7g05610 338 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Trre7g05610 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Trre7g05610 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Trre7g05610 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Trre7g05610 338 CDD retinol-DH_like_SDR_c_like 37 315 - -
Trre7g05610 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 296 IPR036291 -
Trre7g05610 338 PANTHER RETINOL DEHYDROGENASE 14 321 - -
Trre7g05610 338 Pfam short chain dehydrogenase 37 178 IPR002347 -
Trre7g05610 338 Gene3D - 22 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05610 Trre-Chr7 61573735 61576937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05610 21 293 Acyl Lipid Metabolism Gene Families AT1G24360 25.524 1.73e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05610 - - gmx:100794347 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05610 7 61573735 61576937 Trre7g05610 7 61573735 61576937 ECH