Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1310 ATGGAAGAGGAAGGAGATCAATTCTATGATACCCGTGAGGAATTGTGTTCTGTCTCTGATGGGGGTTCAGATTGTTCAGAATCGGATGAATCTAGTTCTGGTAACGGACATGTTACTAGGTACCAGGTTTGGACAAAACACCTTGAAAGTGTTCACCAGAGACGTCTCAATTTCCTGAGATGGATGGGTTTAGAGTCTGATGGGAATTCAATGAAGGGTGAGGAGTTGGCAGATTCATCTTGTGGAATTGACCGAATCACTGCAACAAGTGGGGCAGTGCTGAGAACTTCTTTTGATGATGAGGGTCTTCCCTCAACCTCAAACCAGATTATGTTGGATTCCTTGTCGAATGAGGCCTCGTGCTCACAAGAAAACCACGATGATTTGCCATGTATGATAAAGAATTTAGATGATGGAACACAGTATATTGTGGATAAACTTGGTCAAGATGGAACTCTTAGTACTCTGCGTGTTTTGGGTTCCAACCAATTGATTAGCTTGGATGAGTTTCAGAGAAATATTGGGTTGTCACCGTTGGTTCGCAGACATTTGCAGAGAGATAATGAAAACACAAGGTTGTTGGGAGTTGCAAAAAGGAAAATGAAGAGAAGTTGGCTAAGGAAACTGGATTCTATTGCTTGTTTTGTTCATAATCGAGGAGCTGATGAAACTAACTGCAAAGACTATGATTCGATGGATAGAAATGGGATCCAGAGAGTTCGAGTACATTCATATAGGAAGCGATTTAAGGAGTTTTCCTCGCTTTACACCGAACAAGAGTTTAAAGCACACAAGGGTGTCATTTTAACAATGAAGTTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGCAATTGTGCGTGTGTGGAAGGTGGTTGAGGATGAAAGATCAAGTGAATTGGACATTCTGGACAATGATCCATCAAATATATATTTCAAAATAAATAATTTTTCATGTGTAGCTCCCCTTGATGTAGATAAAGAGAAATTAGTTAAAACGGAGAAGTTGAGGAGATCCTCTGATTCAACCTGTGTGATTATCCCACCAAAGACCTTCCGCATATCAGGGAAACCTTTGCATGAGTTCCAAGGGCACAGTGGAGACATTTTAGACCTCGCTTGGTCCAAAAGAGGGTTTCTACTGTCATCATCTGTTGATAAGACAGTGCGCCTATGGCATGTAGGAATGGATAGATGTCTTAGAGTTTTCTCCCACAATAATTATGTGACGTGTGTAAATTTCAATCCCGTCAATGATAATTTTTTCATCAGTGGTTCAATTGATGGAAAAGTACGCATCTGGGAAGTTGTTCACTGCCGGGTTAGTGATTACATTGATATCAGAGAGATAGTCACGGCTGTGTGCTTCCGCCCGGATGGGAAGGGCACAATTGTGGGTACCATGGCAGGCAATTGCCGTTTCTATGAAATCATAGATAATCACCTGCAATTGGATGCTCAAGTGTGTCTACGAGGCAAAAAGAAGACACTAGGGAAGAGGATCACTGGCTTTCAGTTTTCACCAAGTGACCCTAGCAAACTATTGGTTGCTTCTGCTGATTCACATGTCTGTATACTTTCTGGAGTTGATGTCATCTACAAATTCAAGGGCCCAAGAAGTGCAGGTCAGAATCACGCTTCCTTCACTACCGACGGGAAACATATAGTCTCGGTTAGTGAGGACTCAAATGTGTGTATCTGGAATTACACTGGTCAGGATAGGAGTACTTCCAAAGCAAAGAAGATTTGGTCTTCAGAGAGTTTCCTGTCACACAATGCAGCAATTGCTGTACCTTGGTCCGGCATCGAGTCAATGCCAGGAACGCTTTTGTCTCCATCACTGGGAGAGGATTTGAATCAAAGGTCATCTCTCTCTTCACCTGACTGTTTCTTCTTGACTCGTGGATTTTTGTCAGAGTTAATCCCAAAGGTTTCGGCTACCTGGCCGGAGGAGGCGCTCGTGGACTCGTGTCAAACTGTTGTTTCTCCAACAATGTGTAAATCAGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGGATGTCTAATTCTCACTTATGGGGCCAAGTAATTGTAACTGCAGGATGGGATGGACACATAAGAGTGTACCAGAATTATGGATTACCCGTTCGTGTTTAA 2145 0.4256 MEEEGDQFYDTREELCSVSDGGSDCSESDESSSGNGHVTRYQVWTKHLESVHQRRLNFLRWMGLESDGNSMKGEELADSSCGIDRITATSGAVLRTSFDDEGLPSTSNQIMLDSLSNEASCSQENHDDLPCMIKNLDDGTQYIVDKLGQDGTLSTLRVLGSNQLISLDEFQRNIGLSPLVRRHLQRDNENTRLLGVAKRKMKRSWLRKLDSIACFVHNRGADETNCKDYDSMDRNGIQRVRVHSYRKRFKEFSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGEDAIVRVWKVVEDERSSELDILDNDPSNIYFKINNFSCVAPLDVDKEKLVKTEKLRRSSDSTCVIIPPKTFRISGKPLHEFQGHSGDILDLAWSKRGFLLSSSVDKTVRLWHVGMDRCLRVFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVHCRVSDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYEIIDNHLQLDAQVCLRGKKKTLGKRITGFQFSPSDPSKLLVASADSHVCILSGVDVIYKFKGPRSAGQNHASFTTDGKHIVSVSEDSNVCIWNYTGQDRSTSKAKKIWSSESFLSHNAAIAVPWSGIESMPGTLLSPSLGEDLNQRSSLSSPDCFFLTRGFLSELIPKVSATWPEEALVDSCQTVVSPTMCKSEYKFLRSACKGMSNSHLWGQVIVTAGWDGHIRVYQNYGLPVRV* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1310 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Apr2g1310 714 Gene3D - 253 490 IPR015943 GO:0005515
Apr2g1310 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 405 IPR001680 GO:0005515
Apr2g1310 714 SMART WD40_4 486 530 IPR001680 GO:0005515
Apr2g1310 714 SMART WD40_4 440 479 IPR001680 GO:0005515
Apr2g1310 714 SMART WD40_4 399 438 IPR001680 GO:0005515
Apr2g1310 714 SMART WD40_4 666 706 IPR001680 GO:0005515
Apr2g1310 714 SMART WD40_4 254 293 IPR001680 GO:0005515
Apr2g1310 714 SMART WD40_4 358 396 IPR001680 GO:0005515
Apr2g1310 714 SMART WD40_4 531 571 IPR001680 GO:0005515
Apr2g1310 714 Pfam WD domain, G-beta repeat 259 293 IPR001680 GO:0005515
Apr2g1310 714 Pfam WD domain, G-beta repeat 359 395 IPR001680 GO:0005515
Apr2g1310 714 Pfam WD domain, G-beta repeat 401 437 IPR001680 GO:0005515
Apr2g1310 714 SUPERFAMILY WD40 repeat-like 254 705 IPR036322 GO:0005515
Apr2g1310 714 MobiDBLite consensus disorder prediction 21 36 - -
Apr2g1310 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 397 - -
Apr2g1310 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 439 IPR001680 GO:0005515
Apr2g1310 714 Gene3D - 496 708 IPR015943 GO:0005515
Apr2g1310 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 439 - -
Apr2g1310 714 PANTHER WD REPEAT DOMAIN 44 2 714 IPR040324 -
Apr2g1310 714 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 2 714 - -
Apr2g1310 714 MobiDBLite consensus disorder prediction 1 36 - -
Apr2g1310 714 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Apr2g1310 714 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Apr2g1310 714 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Apr2g1310 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 302 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1310 Apr-Chr2 19269863 19274315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1310 359 559 Miscellaneous Gene Families AT5G08390 27.273 8.47e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1310 - - gmx:100788374 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1310 2 19269863 19274315 Apr2g1310 2 19269863 19274315 ECH
Apr2g1310 2 19269863 19274315 Apr1g0645 1 7755717 7761037 ECH