Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05611 ATGGTGGGGAATTGGAAAAGGGTTGTGGAATTGGTGGATATGGAATTGGAAGTTGATGAGGATCAATTCTATGATACTTGTGAGGATTTGTGTTCTGTTTCTGATGAGGGTTTTGATTATTGTTTAGAATCTTGTTCTGGTGGTGGTAGTAGTAGTAATGATTATGTTACTAGGTTCAATTTTTGGACTAAAAAACTTGAAAGTGTTCATCATAGACGAATCAATTTTTTAAGATGGATGGGTTTGGAGTATGATGAGAATTCAATTGATGGAGATGAGTTTGGAGAAGATTCGTCTCGTGGAGTTGACCGAATCACTTCAACTAGTGGGGAGGGTTTGAGAATTGTAAATCAGATTGTGTTGGATTCCTTGTCAAATGAGGCAACTAGTGGGGATGGTACTGAGAATTTGACATGTATGATAAAGAATTTAGATGATGGAACACAGTATGTTGTAGATAAATTGGATCAAGATGGAACGCTTAATACCTTGCGTGTTCTCGGTTCGAACCAATTGATTAGTTTGGACGAGTTTCATAAAAATATTGGGCCGTCATCATTTGTTCGTAGACATTTGCAGAGAGATGCTGAAAGCACTAGATTGTTGAGTGTTGCTAAAAAGAAGATGAAGAAAGGTTGGTTAAGCAAACTGGATTCTATTGCTTGTTTTTATCATAATCAAGAGTTTGATGAAACTTGCTGCAACAAAGACTTAGATTCTAGGATACATAAAGTTCGTGTTCAGCCGCATAAGAAGCGAATTAAGGAGCTTTCCTCTCTTTACGCTGAACAAGAGTTTAAAGCACACAAAGGCGTTATTTTGACAATGAAGTTCAGTCTTGATGGAAAATATCTGGCTAGTGGCGGTGAAGATGGCATTGTGCGTGTGTGGAAGGTGGTTGAAGATGAAAGATCGAATGAACTGAACATTCTAGACAATGATCCATCCAATATATATTTCAAAATGAATCAATTTACTGGTTGTGTGGCTCCTCTTGATGTAGATAAAGAAAAATTAGTCAAAACAGAGAAGTTGAAGAGATCATCTGCTTCAACTTGTGTGGTTATCCCACCAAAGACCTTCCGCATATTGGCAAAACCTTTGCATGAATTCCAGGGGCATAATGATGACATTTTAGACCTTGCATGGTCCAAATCAGGGTTTCTATTGTCATCCTCGGTTGACAAGACAGTGCGCTTATGGCAAGTAGGGATCAACAAATGTCTTCGAGTTTTCTCTCACAATAATTATGTGACTTGTGTGAATTTCAATCCTGTCAATGATAATGTTTTCATCAGTGGTTCAATTGATGGAAAGGTGCGCATATGGGAAGTTGTTCGCTGTCGGGTTGTTGATTATATTGATATCAGAGAGATAGTCACAGCTGTATGTTTCCGCCCTGATGGAAAGGGCACAATTGTGGGTACCATGGTAGGCAATTGCCGTTTTTATGATATCCTAGATAATCACATGAAAATTGATACTCAAATGTCGTTACAAGGCAAAAAGAAGACATCGGGGAAAAGAATCACTGGCTTTCAGTTTTCACCCAGTGACCCGAGCAAATTGTTGGTCGCCTCTGCTGATTCACACGTGTGTGTACTCTCTGGCGGTGATGTCATCTACAAATTCAAGGGTCTGAGAAGTGCAGGTCAGATGCATGCTTCCTTCACATCCGACGGGAAACATATCGTTTCACTTAGCGAAGGTTCAAATGTTTGTATCTGGAATCACACTGGCCAGGATAGGAATGCGTCCAAAGCAAAGCAGATTTTGTCTTCGGAGAGTTTCTTATCCCACAACGCAACAATCGCCATACCTTGGTGTGGCATTGAGTCAACGCCGTTGTCCCCTTCACTCGATGAAAACTTGATTCAGCGGTCATCCTTGTCTTCTCCCGATTGTTTCTTCATGGGTCGAGGATTTCTTTCCGAGTTAGTCCCAAAGGTTTCTGCTACATGGCCAGAGGAGGCGCTTCTCGATCCAGGGCAAACTGTTGTTTCTCCTACAATATGTAAATCAGAGTATAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCTCATTTATGGGGCCAAGTGATTTTAACAGCAGGATCTGATGGATTCATAAAAGTGTACCAAAATTATGGCTTACCCGTTCGCGTTTGA 2154 0.4039 MVGNWKRVVELVDMELEVDEDQFYDTCEDLCSVSDEGFDYCLESCSGGGSSSNDYVTRFNFWTKKLESVHHRRINFLRWMGLEYDENSIDGDEFGEDSSRGVDRITSTSGEGLRIVNQIVLDSLSNEATSGDGTENLTCMIKNLDDGTQYVVDKLDQDGTLNTLRVLGSNQLISLDEFHKNIGPSSFVRRHLQRDAESTRLLSVAKKKMKKGWLSKLDSIACFYHNQEFDETCCNKDLDSRIHKVRVQPHKKRIKELSSLYAEQEFKAHKGVILTMKFSLDGKYLASGGEDGIVRVWKVVEDERSNELNILDNDPSNIYFKMNQFTGCVAPLDVDKEKLVKTEKLKRSSASTCVVIPPKTFRILAKPLHEFQGHNDDILDLAWSKSGFLLSSSVDKTVRLWQVGINKCLRVFSHNNYVTCVNFNPVNDNVFISGSIDGKVRIWEVVRCRVVDYIDIREIVTAVCFRPDGKGTIVGTMVGNCRFYDILDNHMKIDTQMSLQGKKKTSGKRITGFQFSPSDPSKLLVASADSHVCVLSGGDVIYKFKGLRSAGQMHASFTSDGKHIVSLSEGSNVCIWNHTGQDRNASKAKQILSSESFLSHNATIAIPWCGIESTPLSPSLDENLIQRSSLSSPDCFFMGRGFLSELVPKVSATWPEEALLDPGQTVVSPTICKSEYKFLRSACKGMSNSHLWGQVILTAGSDGFIKVYQNYGLPVRV 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05611 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Trre7g05611 717 FunFam WD repeat-containing protein 44 isoform A 253 498 - -
Trre7g05611 717 Gene3D - 248 606 IPR015943 GO:0005515
Trre7g05611 717 SUPERFAMILY WD40 repeat-like 260 708 IPR036322 GO:0005515
Trre7g05611 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 445 - -
Trre7g05611 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 403 - -
Trre7g05611 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 299 - -
Trre7g05611 717 SMART WD40_4 405 444 IPR001680 GO:0005515
Trre7g05611 717 SMART WD40_4 537 577 IPR001680 GO:0005515
Trre7g05611 717 SMART WD40_4 447 485 IPR001680 GO:0005515
Trre7g05611 717 SMART WD40_4 669 709 IPR001680 GO:0005515
Trre7g05611 717 SMART WD40_4 364 402 IPR001680 GO:0005515
Trre7g05611 717 SMART WD40_4 492 536 IPR001680 GO:0005515
Trre7g05611 717 SMART WD40_4 259 298 IPR001680 GO:0005515
Trre7g05611 717 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Trre7g05611 717 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Trre7g05611 717 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Trre7g05611 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 411 IPR001680 GO:0005515
Trre7g05611 717 PANTHER WD REPEAT DOMAIN 44 18 714 IPR040324 -
Trre7g05611 717 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Trre7g05611 717 Pfam WD domain, G-beta repeat 366 401 IPR001680 GO:0005515
Trre7g05611 717 Pfam WD domain, G-beta repeat 407 443 IPR001680 GO:0005515
Trre7g05611 717 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 144 314 IPR011044 -
Trre7g05611 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 445 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05611 Trre-Chr7 61580783 61584022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05611 240 456 Miscellaneous Gene Families AT5G08390 22.822 5.44e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05611 - - gmx:100788374 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05611 7 61580783 61584022 Trre7g05611 7 61580783 61584022 ECH