Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03741 ATGGAATTGGAAGTGGATGAGGATCAATTCTATGATACTCGTGAGGATTTGAGTTCTGTGTCTGATGATGAGGGTTTTGATTATTGTTTAGAATCTTGTTCTGGTGGTGGTGGTGATTGTGTTGCTAGGTTCAATTTTTCGATTAACAGCCTTGAGAGTGTTCGTGATAGACGATTCAGTTTTATGAGATGGATAGGTTTGGAGTATGATTCGAATTCGATTGAGGGAGATGATAATCTGTCTTGTGGAGTTGACCGGATCAGTTCGACCAGTGGGGCTGTTTTGCGAACTGTAGAAGGTGTTTCTTCAATTTCGAGTAAGATTGTGTTTGATTCGTTGTCGAATGAGGGTTCTAGGTTGTTGGAAAATCGGGGTGATGGTAATGAGGATTTGACATGTATGATAAAGAATCTGGATGATGGAACACGGTATGTTGTAGATGAATTGGATCAAGAGGGGAAACTTAATACCCTGCGTGTTCTGGGTTCGAATCAGTTGATTAGTTTGGAAGAGTTTCACAAGAATATTGGGCCGTCGTCATTTGTTCGTAGACATTTGCAGAGAGAGGCGGAAAGTACTAGATTGTTGAGTGTTGCTAAAAAGAAGATGAAGAGAGGTTGGTTAAGCAAACTGGATTCTATTACTTGTTTTTATCCGAATCAAGGATTTGATGAAACTTGCTGCAAGGATTTTGATTCTCGGATACAAAGAGTTCGGGTTAATCTGCATAAGAAACGAGTCAAGGAGCTTTCCTGTCTTTATACTGAACAGGAGTTCAAAGCACACAAAGGCGTTATTTTGACAATGAAGTTCAGTCTCGATGGAAGATATCTAGCTAGTGGTGGTGAAGATGGCATCGTGCGCGTGTGGAAGGTGGTTGAGGATGTAAGAACAAATGAAATGAACATTCTGGACGATGATCCATCCAGTATATATTTCAAAATGAATCAATTTACTGGTATTGTGGCTCCCCTTGACGTAGATAAAGAGAACTTAGTTAAAACAGAGAAGTTGAAAAGATCTTCTTCTTCAACCTGTGTGATTATCCCACCAAAGACCTTCCGCATATTGGCGAAACCTATGCATGAATTCCAGGGGCATAGTAATGACATCTTAGACCTTGCATGGTCCAAATCAGGGTTTCTACTCTCATCCTCTCTTGATAAGACAGCGCGCCTATGGCAAGTAGGGATTGACAAATGTCTTCGAGTTTTCTCCCACAATAATTATGTGACATGTGTGAATTTCAATCCTGTCAATGATAATTTTTTCATCAGCGGTTCAATTGATGGAAAGGTGCGTATCTGGGAAGTTGTTCGCTGTCGGGTTGTTGATTACATTGATATCAGAGAGATAGTCACAGCTGTGTGCTTCCGCCCTGATGGAAAGGGAACAATTGTGGGTACCATGGCAGGCAATTGCCGTTTCTATGATATCCTAGATAGTCATATGAAAATGGATACGAAAATGTCGTTACAAGGCAAAAAGAAGACATCGGGGAAAAGGATCACTGGCTTTCAGTTTTCCCCCAGTGACCCGAGCAAGTTATTGGCTGCTTCGGCGGATTCACATGTATGCATACTCTCTGGAGTTGATGTCATTTACAAATTCAAGGGCCTGAGAAGTGCAGGTCAGATGCATGCTTCCTTCACCTCTGATGGGAAACATATCGTTTCGCTTAGTGAAGGTTCAAATGTTTGTATCTGGAATCACACCGGCCAAGATAGGAATACTTCCAAAGCAAAGAAGATTATGTCTTCCGAGAGTTTTCTATCCCACAATGCAACGATCGCCATACCTTGGTGTGGAATTGAATCAACACCATTGTCCCCTTCACTCGAAGAAAACTTGATTCAGAGGTCATCGTTGTCTTCTCCTGATTGTTTCTTCATGAGTCGCGGATTTCTTTCCGAGTTAGTCCCAAGGGTTTCTGCCACATGGCCAGAGGAAACACTTCTCAACTCAGCAGGATCTGATGGATTCATAAAAGTGTACCAAAATTACGGCTTACCTGTTCGCGTTTGA 2025 0.4178 MELEVDEDQFYDTREDLSSVSDDEGFDYCLESCSGGGGDCVARFNFSINSLESVRDRRFSFMRWIGLEYDSNSIEGDDNLSCGVDRISSTSGAVLRTVEGVSSISSKIVFDSLSNEGSRLLENRGDGNEDLTCMIKNLDDGTRYVVDELDQEGKLNTLRVLGSNQLISLEEFHKNIGPSSFVRRHLQREAESTRLLSVAKKKMKRGWLSKLDSITCFYPNQGFDETCCKDFDSRIQRVRVNLHKKRVKELSCLYTEQEFKAHKGVILTMKFSLDGRYLASGGEDGIVRVWKVVEDVRTNEMNILDDDPSSIYFKMNQFTGIVAPLDVDKENLVKTEKLKRSSSSTCVIIPPKTFRILAKPMHEFQGHSNDILDLAWSKSGFLLSSSLDKTARLWQVGIDKCLRVFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVRCRVVDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYDILDSHMKMDTKMSLQGKKKTSGKRITGFQFSPSDPSKLLAASADSHVCILSGVDVIYKFKGLRSAGQMHASFTSDGKHIVSLSEGSNVCIWNHTGQDRNTSKAKKIMSSESFLSHNATIAIPWCGIESTPLSPSLEENLIQRSSLSSPDCFFMSRGFLSELVPRVSATWPEETLLNSAGSDGFIKVYQNYGLPVRV 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03741 674 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Vifa6g03741 674 PRINTS G protein beta WD-40 repeat signature 424 438 IPR020472 -
Vifa6g03741 674 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Vifa6g03741 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 292 IPR001680 GO:0005515
Vifa6g03741 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 404 IPR001680 GO:0005515
Vifa6g03741 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 292 - -
Vifa6g03741 674 Gene3D - 448 669 IPR015943 GO:0005515
Vifa6g03741 674 SUPERFAMILY WD40 repeat-like 255 665 IPR036322 GO:0005515
Vifa6g03741 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 404 438 - -
Vifa6g03741 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 438 IPR001680 GO:0005515
Vifa6g03741 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 364 396 - -
Vifa6g03741 674 Gene3D - 314 440 IPR015943 GO:0005515
Vifa6g03741 674 PANTHER WD REPEAT DOMAIN 44 5 671 IPR040324 -
Vifa6g03741 674 SMART WD40_4 440 478 IPR001680 GO:0005515
Vifa6g03741 674 SMART WD40_4 252 291 IPR001680 GO:0005515
Vifa6g03741 674 SMART WD40_4 357 395 IPR001680 GO:0005515
Vifa6g03741 674 SMART WD40_4 485 529 IPR001680 GO:0005515
Vifa6g03741 674 SMART WD40_4 398 437 IPR001680 GO:0005515
Vifa6g03741 674 SMART WD40_4 530 570 IPR001680 GO:0005515
Vifa6g03741 674 Pfam WD domain, G-beta repeat 400 436 IPR001680 GO:0005515
Vifa6g03741 674 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Vifa6g03741 674 Pfam WD domain, G-beta repeat 359 394 IPR001680 GO:0005515
Vifa6g03741 674 Gene3D - 129 313 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03741 Vifa-Chr6 1230062214 1230065620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03741 336 575 Miscellaneous Gene Families AT5G08390 25.188 1.83e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03741 - - gmx:100788374 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03741 6 1230062214 1230065620 Vifa6g03741 6 1230062214 1230065620 ECH