Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00412 ATGGGAGAGGGTGAGGATCAATTCTATGATACACGTGAAGAATTGTGTTCTGTCTCTGATGGGGATTCAGATTGTTCTGAACCAGATGAATCTAGTTCTGGAAATGGATATGTTACTAGGTACCAGGTTTGGACAAACAACCTTGAAAGTGTTCACCAGCGACGACTCAATTTCCTAAGATGGATGGGTTTAGAGTCTGATGTGAATTCAATGGAGGGAGAGGAGTTGGCAGATCCATCATCTTGTGGAGTTGACCGAATCACAGCAACAAGTGGGGCTGTGCTGAGAAATTCAGTTTCTGTTGAGGGTCTTCCCTCAACCTCAGAACAGATTGTGTTGGATTGTTCTTCAATTGAGGCTTCGAGTTCGGTAGAAAATCGCGGTGATATGGAGAATTTGGCTTGTATGATAAAGGATTTGGATGATGGAACACAGTATGTTGTGGATAAACTGGGTCAAGATGGAACTGTTAGCACACTGAGGGTTCTTGGTTCCAACCAATTGATTAGCTTGGAAGAGTTTCAGAGAAATATTGGGCAATCACCATTGGTTCGGAGGCATTTGCAGAGAGATGCTGAAAACACAAGATTCTTGGGTGTGACAAAGAAGAAAATAAAGAAGGGTTGGCTAAGGAAACTGGATTCTGTGGCTTGTTTTATTCATAATCAAGGGTTTGATGAAACTTACAGCAAAGACTTTGATTCGGTAGATGGAACTGGGATACAAAGAGTTCGAGTTCATCCACATAGGAAGCGATTTAAGGAGCTTTCCTCCCTTTATACTGGACAGGAGTTTAAAGCACATAAGGGTGTTATTTTGACAATGAAGTTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATTGTACGTGTGTGGAAGGTGGTTGAGGATGAAAGATCAAATGAATTGGATATTCTGGACAATAATCCATCAACTACATATTTCAAATTGAATAAATTTTCATGTGTAGCCCCACTTGATGTAGATAAAGAGAAATTAGTTAAAACAGAGAAGTTGAGGAGATCGTCTGATTCAACCTGTGTAATTATCCCACCGAAGACCTTCCGCATATCAGGGAAACCATTACACGAGTTCCATGGGCATAATGGTGACATTTTAGACCTTGCATGGTCCAAAAGAGGGTTTCTACTGTCATCCTCTGTTGATAAGACAGTGCGCCTATGGAAGGTGGGAATTGACCGATGTCTTAGAGTTTTCTCCCACAACAATTATGTGACATGTGTCAATTTCAATCCCGTTGATGATAATTTTTTCATCAGTGGTTCAATTGATGGAAAAGTGCGCATCTGGGAAGTTGTTCGCTGTCGGGTTATTGATTACATTGATATCAGAGAGATAGTCACAGCTGTGTGCTTCTGCCTTGATGGAAAGGGCACAATTGTGGGTACCATTGCAGGCAATTGCCGTTTCTACGATATCCTAGATAATCATATGCAATTGAATACTCAATTGTGTTTACTAGGCAAAAAGAAGACGTCAGGCAAAAGGATCACTGGCTTTCAGTTTTCACCAAGTGACCCAAGCAAATTGTTGGTTGCTTCTGCTGATTCACATGTCTGTATACTTTCTGGAGTTGATGTCATCTACAAATTCAAGGGCCTAAGAAGTGCAGGTCGGATGCATGCTTCCTTCACCTCTGATGGGAAACACGTTGTCTCAGTTAGTGAGGGTTCAAATGTTTGTATCTGGAACTACCCTGGCCAGGATAAGAGTACTCCCAAAGCAAAGAAGATTTGGTCTTCTGAAAGTTTTCTATCCCACAATGCAGCAATTGCTATACCTTGGTGTGGCATTGAGTCAAATCCAGGAACACTCTTGTCCCCATCACTGAGAGAGGATTTCAATCAGAGGTCACCCTCTCTGTCTTCTCCTGATTGTTTCTTCTTGAGCCGCGGATTCCTGTCAGAGTTAGTCCCAAAGGTTTCTCCAACCTGGCCTGAGGAGACACTCATGGACTCACATCAAACTGTTGTTTCTCCTAGAATGTGTAAATCAGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCCCACTTGTGGGGCCAAGTAATTGTAACAGCAGGAAGGGATGGTCACATAAGAGTGTACCAGAATTATGGTTTACCAGTTCGGGTTTGA 2160 0.4218 MGEGEDQFYDTREELCSVSDGDSDCSEPDESSSGNGYVTRYQVWTNNLESVHQRRLNFLRWMGLESDVNSMEGEELADPSSCGVDRITATSGAVLRNSVSVEGLPSTSEQIVLDCSSIEASSSVENRGDMENLACMIKDLDDGTQYVVDKLGQDGTVSTLRVLGSNQLISLEEFQRNIGQSPLVRRHLQRDAENTRFLGVTKKKIKKGWLRKLDSVACFIHNQGFDETYSKDFDSVDGTGIQRVRVHPHRKRFKELSSLYTGQEFKAHKGVILTMKFSLDGKYLASGGEDGIVRVWKVVEDERSNELDILDNNPSTTYFKLNKFSCVAPLDVDKEKLVKTEKLRRSSDSTCVIIPPKTFRISGKPLHEFHGHNGDILDLAWSKRGFLLSSSVDKTVRLWKVGIDRCLRVFSHNNYVTCVNFNPVDDNFFISGSIDGKVRIWEVVRCRVIDYIDIREIVTAVCFCLDGKGTIVGTIAGNCRFYDILDNHMQLNTQLCLLGKKKTSGKRITGFQFSPSDPSKLLVASADSHVCILSGVDVIYKFKGLRSAGRMHASFTSDGKHVVSVSEGSNVCIWNYPGQDKSTPKAKKIWSSESFLSHNAAIAIPWCGIESNPGTLLSPSLREDFNQRSPSLSSPDCFFLSRGFLSELVPKVSPTWPEETLMDSHQTVVSPRMCKSEYKFLRSACKGMSNSHLWGQVIVTAGRDGHIRVYQNYGLPVRV* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00412 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 298 - -
Rops2g00412 719 Pfam WD domain, G-beta repeat 263 297 IPR001680 GO:0005515
Rops2g00412 719 Pfam WD domain, G-beta repeat 363 400 IPR001680 GO:0005515
Rops2g00412 719 Pfam WD domain, G-beta repeat 405 441 IPR001680 GO:0005515
Rops2g00412 719 SMART WD40_4 494 534 IPR001680 GO:0005515
Rops2g00412 719 SMART WD40_4 444 483 IPR001680 GO:0005515
Rops2g00412 719 SMART WD40_4 258 297 IPR001680 GO:0005515
Rops2g00412 719 SMART WD40_4 671 711 IPR001680 GO:0005515
Rops2g00412 719 SMART WD40_4 535 575 IPR001680 GO:0005515
Rops2g00412 719 SMART WD40_4 403 442 IPR001680 GO:0005515
Rops2g00412 719 SMART WD40_4 362 400 IPR001680 GO:0005515
Rops2g00412 719 MobiDBLite consensus disorder prediction 17 36 - -
Rops2g00412 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Rops2g00412 719 PANTHER WD REPEAT DOMAIN 44 4 716 IPR040324 -
Rops2g00412 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 443 - -
Rops2g00412 719 SUPERFAMILY WD40 repeat-like 260 710 IPR036322 GO:0005515
Rops2g00412 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 443 IPR001680 GO:0005515
Rops2g00412 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 409 IPR001680 GO:0005515
Rops2g00412 719 Gene3D - 498 713 IPR015943 GO:0005515
Rops2g00412 719 Gene3D - 257 497 IPR015943 GO:0005515
Rops2g00412 719 FunFam WD repeat-containing protein 44 isoform A 252 496 - -
Rops2g00412 719 PRINTS G protein beta WD-40 repeat signature 429 443 IPR020472 -
Rops2g00412 719 PRINTS G protein beta WD-40 repeat signature 387 401 IPR020472 -
Rops2g00412 719 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Rops2g00412 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00412 Rops-Chr2 6072369 6076758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00412 260 473 Miscellaneous Gene Families AT5G08390 23.333 5.44e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00412 - - gmx:100788374 1208.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00412 2 6072369 6076758 Rops2g00412 2 6072369 6076758 ECH