Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00404 ATGGAATTGGATGATGATCAATTCTATGATACTCATGAGGATTTCTGTTCTGTCTCTGATAAGGGTTCTGATTATTGTTCAGAATCATGTTCtagtaataataattataataatgaatTTGTTACTAGGTTTCATGTTTGGACTAAAAACCTTGAAAGTGTTCACCACAGACGCTTCAATTTTTTAAGATGGATGGGTTTGGAGTATGATGTGGATTCAATTGAGGGAGATGAGTTAGGAGGAGATTCATCTGGTGGAGTTGACCGATTCTTCGAAACCAGTGGGGATGTGTTGGGAACTATAGAGGGTCTTGTGTTGGATTCCTTGTCAAATTATGCTTCTAGGTCGTTAGAAAATTGTGTTGATGGTACTGAGGATTTGGCTTGTATGATAAAGAATTTGGATGATGGAACACAGTATGTTGTAGATAAATTAGATCAAGATGGAACACTTAATACACTGCGTGTTTTGGGTTCGAACCAATTGATTAGTTTCGAAGAGTTTCATAGAGATATTGGGCCGTCGTCGTTTGTTCGCAGACATTTGCAGAGAGATGCTGAAAGTACTAGATTGTTGTGTGTTGCTAAAAGGAAAATGAAGAGAGGTTGGTTGAAGAAACTGGATACAATTACTTGTTTCTATCATAATCAAGGGCTTGGTGAAACTTGCTGCAAAGACTTTGATTCTGGAATAAAAAGAGTTCGAGTTCATCCGCATAAGAAGCGAGTTAAGGAGCTTTCAGCTCTTTATACTGAACAAGAGTTTAAAGCACACAAGGGTGTTATTTTGACAATGAAGTTCAGTCCTGATGGAAAATATCTGGCTAGTGGTGGTGAAGACGGCATTGTGCGTGTGTGGAAGGTGGTTGAGGATGATAGATCAAATGAATTGAACATAGTGGACAATGATCCATCAAATATATATTTCAAAATGAATAAATTTTCTGGTTGTGTGGCACCCCTTGATGTAGGTAAAGAGAAATTTGTTAAAACAGAGAAgatgaagagatcatctccttcaacatgtgtgattataccaccaaagacctttCGCATATCGGAGAAACCTTTGCATCAATTCCAGGGGCATAGTGATGACATTTTAGACCTTGCATGGTCCAAATCAGGGTTTCTACTTTCATCGTCTGTGGATAAGACAGTGCGCCTATGGCAAGTAGGGATTGACAAATGTCTTCGAGTTTTCTCCCACAATAATTACGTGACATGTGTGAATTTTAGTCCTATCAATGATAAGATTTTCATCAGTGGTTCAATTGATGGAAAGGTGCGGATCTGGGAAGTAGTTCGCTGTCGGGTTGTTGATTACATTGATATCAGAGAGATAGTCACGGCTGTGTGCTTCCGCCCTGATGGAAAGGGCACGATTGTCGGTACCATGGCGGGCAATTGTCGTTTATATGACATTCTAGATAATCATATGAAGAAGGATACTCAATTGTCGTTACAAGGCAAAAAGAAGACATCGGGGAAAAGGATCACGGGCTTTCAGTTTTCACCCAGTGACCCGAGCAAATTGTTGGTTGCTTCTGCCGATTCTCATGTCTGTATACTCTCTGGAGTTGATGTCATCTACAAATTCAAGGGACTGAGGAGTGCAGGTCAGATGCACGCATCCTTCACCTCCGATGGGAAACACATCGTCTCACTTAGCGAAGGTTCAAATGTTTGTATCTGGAATCACACTGGCCAGGATAAGAATACTTCCAAACCAAAACAGATTTGGTCTTCTGAGAGTTTTCTATCCAACAATGCATCAATCGCCATACCTTGGTGTGGCATCGAGTCCATGCCGTTGTCCCCTTCGCTCGGAGAAGACTTGATTCGTAGGTCATCCTTGTCTTCTCCCGATTGTTTCTTCATGGGTCGCGGATTTCTTTCCGAGTTAGTCCCAAAGGTTTCTCCAACATGGCCGGAGGAGACGCTTCTTGACTCGGGTCAGACTGTTGTTTCTCCTACAATGTGTAAATCAGAGTACAAGTTCTTGAGAGGTGCTTGCAAGGGAATGTCTAATTCTCATTTGTGGAACCAAGTGATTGTAACAGCAGGAACTGATGGATACATAAAAGTGTACCAAAATTACGGCTTACCTGTTCGAGTTTGA 2121 0.3993 MELDDDQFYDTHEDFCSVSDKGSDYCSESCSSNNNYNNEFVTRFHVWTKNLESVHHRRFNFLRWMGLEYDVDSIEGDELGGDSSGGVDRFFETSGDVLGTIEGLVLDSLSNYASRSLENCVDGTEDLACMIKNLDDGTQYVVDKLDQDGTLNTLRVLGSNQLISFEEFHRDIGPSSFVRRHLQRDAESTRLLCVAKRKMKRGWLKKLDTITCFYHNQGLGETCCKDFDSGIKRVRVHPHKKRVKELSALYTEQEFKAHKGVILTMKFSPDGKYLASGGEDGIVRVWKVVEDDRSNELNIVDNDPSNIYFKMNKFSGCVAPLDVGKEKFVKTEKMKRSSPSTCVIIPPKTFRISEKPLHQFQGHSDDILDLAWSKSGFLLSSSVDKTVRLWQVGIDKCLRVFSHNNYVTCVNFSPINDKIFISGSIDGKVRIWEVVRCRVVDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRLYDILDNHMKKDTQLSLQGKKKTSGKRITGFQFSPSDPSKLLVASADSHVCILSGVDVIYKFKGLRSAGQMHASFTSDGKHIVSLSEGSNVCIWNHTGQDKNTSKPKQIWSSESFLSNNASIAIPWCGIESMPLSPSLGEDLIRRSSLSSPDCFFMGRGFLSELVPKVSPTWPEETLLDSGQTVVSPTMCKSEYKFLRGACKGMSNSHLWNQVIVTAGTDGYIKVYQNYGLPVRV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00404 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 288 - -
Car06g00404 706 SUPERFAMILY WD40 repeat-like 250 697 IPR036322 GO:0005515
Car06g00404 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 392 - -
Car06g00404 706 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Car06g00404 706 PRINTS G protein beta WD-40 repeat signature 378 392 IPR020472 -
Car06g00404 706 PRINTS G protein beta WD-40 repeat signature 420 434 IPR020472 -
Car06g00404 706 SMART WD40_4 353 391 IPR001680 GO:0005515
Car06g00404 706 SMART WD40_4 436 474 IPR001680 GO:0005515
Car06g00404 706 SMART WD40_4 248 287 IPR001680 GO:0005515
Car06g00404 706 SMART WD40_4 481 525 IPR001680 GO:0005515
Car06g00404 706 SMART WD40_4 658 698 IPR001680 GO:0005515
Car06g00404 706 SMART WD40_4 394 433 IPR001680 GO:0005515
Car06g00404 706 SMART WD40_4 526 566 IPR001680 GO:0005515
Car06g00404 706 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 4 706 - -
Car06g00404 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 296 IPR001680 GO:0005515
Car06g00404 706 Pfam WD domain, G-beta repeat 355 390 IPR001680 GO:0005515
Car06g00404 706 Pfam WD domain, G-beta repeat 396 432 IPR001680 GO:0005515
Car06g00404 706 Pfam WD domain, G-beta repeat 253 287 IPR001680 GO:0005515
Car06g00404 706 Gene3D - 239 594 IPR015943 GO:0005515
Car06g00404 706 PANTHER WD REPEAT DOMAIN 44 4 706 IPR040324 -
Car06g00404 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 434 IPR001680 GO:0005515
Car06g00404 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 400 IPR001680 GO:0005515
Car06g00404 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00404 Car-Chr6 4229441 4233431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00404 362 565 Miscellaneous Gene Families AT5G08390 25.238 9.40e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00404 - - gmx:100788374 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00404 06 4229441 4233431 Car06g00404 06 4229441 4233431 ECH