Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3104 ATGGAAGGGGGAGAGGATCAATTTTATGATACTCGTGAGGAATTGTGTTCTTCCTCTGATGGGGGTTCGGATTGTTCAGAATCGGATGAATCTAGTTCTGGTATTAATAGACATGTTACCAGGCACAAGGTTTGGGTAAAAGACCTTGAAAGTGTTAACCAGAGACGCCTCAATTTCTTGAGATGGATGGATTTGGAGTCTGATTTAAATTACTCACCTAAGGAAGAGGAGTTTGAAGATCAACCTTGTGGGATTGACCGAATCACTGCAACAAGTGGGGCGGTGTTGAGGACTTCTCTTGCTGTTGAGGAGGGTCTTCCCTCAACCTCAAACCAGATTGTGTTGGATTCCTTGTCAGGCGAGGCTCCCGGTTCCCGAGAAAATCGCGAGAATTTGGCGTGTATGATAAGGAATTTGGATGATGGAACACAGTATATTGTGGATAAGCTGGGTCAGGATGGAACTCTTAGTACCCTGCGTGTTTTGGGTTCAAACAAATTGACTAGCTTGGAGGAGTTTCAGAGAAATACTTTGCCTTCATCGATGGTTCGCAGACATTTGCAGAGAGATGCTGAAAACACTAGTTTGTTAGGAGTTGCAAAAAGAAAAATGAAAAGGGGTTGGCTAAGGAAACTGGATTCTATTGCTTGTTTTGTTCATAATCATGGGCTTCATGAAACTAAATGCAAAGACTGTGATTCAGTGGATAGAAGTGGGATACAAAGAGTTCGAGTTCATTCGTATAGGAAGCGGTTTAAGGAGCTTTCATCCCTTTACACTGAGCAGGAGTTCAAAGCACATAAGGGTGTTATTTTGACAATGAAATTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGATGATGGCATGGTACGTGTGTGGAAGGTGGTTGAGGATGAGAGATCAAGTGAACTGGACATTCTGGACAATGATCCGTCAAATATATATTTCAAAATAAATAATTTTTCATGTGTTGCTCCCCTTGGTGTAGATAAAGAGAAATTAGTCAAAACGGAGAAGTTGAAAAGATCCCCCGAAGCAACCTGTGTGATTGTCCCACCAAGGACCTTCCGTATATCGGCAAAACCTTTGCACGAGTTCCAAGGTCACAGTGGTGACATTTTGGACCTTGCTTGGTCCAAAAGAGGGTTTCTACTGTCATCCTCTGTTGATAAGACAGTGCGCCTATGGCATGTGGGAATTGACAGATGTCTTAGAGTTTTCTCCCACAATAATTATGTGACATGCGTGAATTTCAATCCCATCAATGATAATTTTTTCATCAGTGGCTCAATAGATGGAAAAGTGCGCATCTGGGAAGTTGTTCACTGTAAGGTCAGCGATTACATTGATATCAGAGAGATAGTCACAGCTGTGTGCTTCCGTCCAGATGGAAAGGGCACAATTGTGGGCACCATGGCAGGCAATTGCCGTTTCTACAATATCCAAGATAATCATCTGCAATTGGATGCTCAGTTGTGTTTACGAGGAAAAAAGAAGACATCAGGGAAAAGGATCACTGGCGTTCAGTTTTCACCAACTGACCCAAGCAAATTATTGGTTGCTTCTGCTGATTCACATGTCTGTATACTTTCTGGAGTTGACATAATCTACAAATTCAAGGGCCTAAGAAGTGCAGGTCAGATGCATGCTTCCTTCACCACTGACGGGAAACATATCATCTCCGTTAGCGAGGATTCAAATGTATGTATCTGGAATTACACTGGCCATGATAGGAGTACTTCCAAAGCAAAGAAAATTTGGTCTTCAGAGAGTTTTCTCTCCCACAACTCGGTAATCGCTGTACCTTGGTGTGGCATTGAGTCAATTCCAGGAACACTCTTATCCCCTTCGCTAGGAGAGGATGCAAATCAGAGGTGTTCGCTGCCTTCACCGGATTGTTTCTTCTTGAGTCGGGGATTTTTGTCAGAGTTGATCCCAAAGGTTTCTGCAACGTGGCCCGAGGAGACACTTGTGGACTCAAATCAAACACAAACTGTTGTTTCTCCTACAATGTGTAAATCAGAGTACAAGTTCTTGAAAAGTGCTTGCAAGGGAATGTCTAATTCCCACTTGTGGGGCCAAGTAATTGTGACAGCAGGATGGGATGGATACATAAGAGTGTATCAGAATTATGGATTACCTGTTCGTGGCTGA 2160 0.4296 MEGGEDQFYDTREELCSSSDGGSDCSESDESSSGINRHVTRHKVWVKDLESVNQRRLNFLRWMDLESDLNYSPKEEEFEDQPCGIDRITATSGAVLRTSLAVEEGLPSTSNQIVLDSLSGEAPGSRENRENLACMIRNLDDGTQYIVDKLGQDGTLSTLRVLGSNKLTSLEEFQRNTLPSSMVRRHLQRDAENTSLLGVAKRKMKRGWLRKLDSIACFVHNHGLHETKCKDCDSVDRSGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGDDGMVRVWKVVEDERSSELDILDNDPSNIYFKINNFSCVAPLGVDKEKLVKTEKLKRSPEATCVIVPPRTFRISAKPLHEFQGHSGDILDLAWSKRGFLLSSSVDKTVRLWHVGIDRCLRVFSHNNYVTCVNFNPINDNFFISGSIDGKVRIWEVVHCKVSDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYNIQDNHLQLDAQLCLRGKKKTSGKRITGVQFSPTDPSKLLVASADSHVCILSGVDIIYKFKGLRSAGQMHASFTTDGKHIISVSEDSNVCIWNYTGHDRSTSKAKKIWSSESFLSHNSVIAVPWCGIESIPGTLLSPSLGEDANQRCSLPSPDCFFLSRGFLSELIPKVSATWPEETLVDSNQTQTVVSPTMCKSEYKFLKSACKGMSNSHLWGQVIVTAGWDGYIRVYQNYGLPVRG* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3104 719 PANTHER WD REPEAT DOMAIN 44 4 718 IPR040324 -
Pvu2g3104 719 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 4 718 - -
Pvu2g3104 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Pvu2g3104 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 408 IPR001680 GO:0005515
Pvu2g3104 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Pvu2g3104 719 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Pvu2g3104 719 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Pvu2g3104 719 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Pvu2g3104 719 SMART WD40_4 443 482 IPR001680 GO:0005515
Pvu2g3104 719 SMART WD40_4 671 711 IPR001680 GO:0005515
Pvu2g3104 719 SMART WD40_4 257 296 IPR001680 GO:0005515
Pvu2g3104 719 SMART WD40_4 534 574 IPR001680 GO:0005515
Pvu2g3104 719 SMART WD40_4 402 441 IPR001680 GO:0005515
Pvu2g3104 719 SMART WD40_4 361 399 IPR001680 GO:0005515
Pvu2g3104 719 SMART WD40_4 489 533 IPR001680 GO:0005515
Pvu2g3104 719 Gene3D - 253 491 IPR015943 GO:0005515
Pvu2g3104 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 442 IPR001680 GO:0005515
Pvu2g3104 719 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Pvu2g3104 719 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Pvu2g3104 719 Pfam WD domain, G-beta repeat 363 398 IPR001680 GO:0005515
Pvu2g3104 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 400 - -
Pvu2g3104 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Pvu2g3104 719 SUPERFAMILY WD40 repeat-like 258 710 IPR036322 GO:0005515
Pvu2g3104 719 MobiDBLite consensus disorder prediction 14 33 - -
Pvu2g3104 719 Gene3D - 492 607 IPR015943 GO:0005515
Pvu2g3104 719 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3104 Pvu-Chr2 46391021 46395508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3104 370 562 Miscellaneous Gene Families AT5G08390 27.136 1.25e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3104 - - gmx:100788374 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3104 2 46391021 46395508 Pvu2g3104 2 46391021 46395508 ECH