Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2867 ATGCTGGAAACAGTTAAATACCTGATCGGGTCCGCGGGTCCAAGCGGGTTCGGGTCCAAGTCAACCGCCGAACAGGTCACCGAAACCTCCGATCTCCGCTCCCTCACCGCCATCATCACCGGTGCCACGTCTGGAATAGGAGCTGAAACGGCGAGGGTGTTGGCGAAGAGAGGGGCGAGGCTGGTTCTGCCGGCGCGGAGCCTGAAAGCTGCGGAGGATGCCAAGGCTCGCATGCTGTCGGAGTTCCCTGACTCTGACATCATTGTTATGCCGCTTGATCTTAGTTCTCTCACTTCCGTTAGGAACTTCGTTACTCGGTTTCAATCCCTCCATTTGCCACTCAATCTCCTCATAAACAACGCTGGAAAGTTTGCACATGAGCACGCGATCTCCGAGGACGGTGTTGAAATGACCTTCGCCACTAATTATCTAGGTCATTTTCTGTTAACAAAGCTGTTGCTGAAGACGATGGTTGAAACGGCAGAGAAGACAGGGGTACAAGGCCGGATCGTGAACGTGTCGTCCAGCATCCACGGTTGGTTTTCCGGTGATGTGATCCCATATCTCGCTTCTATAAGCCGCAACAAATGCCATTACGACGCCACACGTGCTTATGCTCTTTCCAAGCTCGCCAACGTTTTACACACCAAGGAGCTTGCTCGCAGACTCCAGCAAATGGGGGCCAACGTGACTGTGAACTGTGTTCATCCGGGGATCGTGAGAACTAGACTCACTAGAGAGCGTGAAGGCTTACTCACAGATTTAGTGTTCTTTTTGGCTTCTAAGCTCTTAAAGACGATTTCTCAGGCAGCTGCAACAACATGCTATGTGGCAACCCACCCAAGGCTGTACAATGTTTCTGGAAATTACTTTGCTGACTGCAACGAAGCCTTCACCTCAAAATTGGGATCCAACTCAACCGAAGCAACAAGGTTATGGGCCGCTTCCGAATTCATGATTTCTAGGGGTCCTAATAAAGCTGCCTTTGACCTACTCAACCACCTTGAATTTTGA 1014 0.5089 MLETVKYLIGSAGPSGFGSKSTAEQVTETSDLRSLTAIITGATSGIGAETARVLAKRGARLVLPARSLKAAEDAKARMLSEFPDSDIIVMPLDLSSLTSVRNFVTRFQSLHLPLNLLINNAGKFAHEHAISEDGVEMTFATNYLGHFLLTKLLLKTMVETAEKTGVQGRIVNVSSSIHGWFSGDVIPYLASISRNKCHYDATRAYALSKLANVLHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKTISQAAATTCYVATHPRLYNVSGNYFADCNEAFTSKLGSNSTEATRLWAASEFMISRGPNKAAFDLLNHLEF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2867 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Dod04g2867 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
Dod04g2867 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Dod04g2867 337 CDD retinol-DH_like_SDR_c_like 36 313 - -
Dod04g2867 337 PANTHER RETINOL DEHYDROGENASE 4 324 - -
Dod04g2867 337 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 324 - -
Dod04g2867 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 294 IPR036291 -
Dod04g2867 337 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Dod04g2867 337 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Dod04g2867 337 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Dod04g2867 337 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Dod04g2867 337 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Dod04g2867 337 Gene3D - 22 322 - -
Dod04g2867 337 Pfam short chain dehydrogenase 36 248 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2867 Dod-Chr4 52537712 52540853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2867 19 293 Acyl Lipid Metabolism Gene Families AT1G63380 27.586 1.67e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2867 - - gmx:100794347 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2867 04 52537712 52540853 Dod04g2867 04 52537712 52540853 ECH