Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00249 ATGCTCGAGACAGTTAAATACCTTCTCGGTTCGGCCGGTCCAAGCGGCTTCGGCTCCAAAACTACCGCCGAACAAGTCACGGAAAACCACGCCGATCTCCGCTCCATCACCGCCATTATCACCGGTGCTACGTCTGGAATCGGAACTGAAACGGCGCGTGTGCTAGCGAAGCGTGGTGCCAGGCTGGTTCTGCCGGCGCGTAGCATGAAAGCTGCGGAAGACGCGAAAGCGCGCATAGTGTCAGAGTGTCCTGATTCAGAGATCATCGTTATGGCTCTTGATCTTAGTTCTCTCAATTCGGTTACTAACTTCGTTGctcactttcactctctcggtttgcctctccatctcctaatAAACAATGCTGGAAAGTTTGCACATGAACATGCTATATCTGAAGATGGCGTTGAAATGACCTTCGCCACTAATTACCTGGGTCATTTTGTGATGACAAATTTGTTGGTGAAAAAGATGGTGGAAACGGCGAAGGAGACAGGAGTGCAGGGTAGGATAGTGAACGTGTCGTCGAGCATCCACGGGTGGTTTTCCGGCGACGCGATTTCATATCTGGCTCTTATGAGCCGCAACAAAAGGCATTACGACGCCACACGTGCTTATGCTCTTTCCAAGCTCGCCAACGTTTTCCACACCAAGGAGCTTGCCCGTAGACTCCAGCAAATGGGGGCCAACGTCACTGTGAATTGTGTTCATCCTGGGATCGTGAGAACCAGACTCACTAGAGAGCGTGAGGGTTTACTCACAGATTTGGTGTTCTTTTTGGCTTCCAAGCTCTTGAAGACCATTCCTCAGGCAGCTGCTACCACATGTTATGTGGCCACTCATCCAAGGCTCTTGAATGTCTCCGGCAAGTACTTTGCTGACTGTAACGAAACTTCAACCTCAAAATTGGGATCCAACTCAACTGAAGCTGCAAGGTTATGGGCCGCGTCCGAATTCATGATTTCTAGGGGTCCAAAAGCTGCCTTTGACCTACTCAATCACCTTGAATTTTGA 1014 0.4803 MLETVKYLLGSAGPSGFGSKTTAEQVTENHADLRSITAIITGATSGIGTETARVLAKRGARLVLPARSMKAAEDAKARIVSECPDSEIIVMALDLSSLNSVTNFVAHFHSLGLPLHLLINNAGKFAHEHAISEDGVEMTFATNYLGHFVMTNLLVKKMVETAKETGVQGRIVNVSSSIHGWFSGDAISYLALMSRNKRHYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKTIPQAAATTCYVATHPRLLNVSGKYFADCNETSTSKLGSNSTEAARLWAASEFMISRGPKAAFDLLNHLEF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00249 337 Gene3D - 22 323 - -
Gma08g00249 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 299 IPR036291 -
Gma08g00249 337 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Gma08g00249 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Gma08g00249 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Gma08g00249 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Gma08g00249 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Gma08g00249 337 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 325 - -
Gma08g00249 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Gma08g00249 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Gma08g00249 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Gma08g00249 337 Pfam short chain dehydrogenase 37 178 IPR002347 -
Gma08g00249 337 CDD retinol-DH_like_SDR_c_like 37 314 - -
Gma08g00249 337 PANTHER RETINOL DEHYDROGENASE 4 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00249 Gma-Chr8 2115970 2118021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00249 38 249 Lipid Metabolism Gene Families AT1G67730 29.091 1.06e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00249 - - gmx:100794347 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00249 08 2115970 2118021 Gma08g00249 08 2115970 2118021 ECH
Gma05g02142 05 42568888 42571384 Gma08g00249 08 2115970 2118021 GST