Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3103 ATGATCGACACTCTTAAATACCTCCTCGGCTCAGCCGGTCCAAGCGGCTTCGGCTCCAAATCCACCGCCGAGCAAGTCACCGAAAACCGCGCCGATCTCCGCTCCTTCACCGCCATCATCACCGGTGCCACGTCTGGAATCGGAGCTGAAACGGCGCGTGTGTTGGCGAAACGTGGAGTCAGGCTGATTCTGCCGGCGCGTAGTGTGAAAGCTGCGGAAGACGCGAAAGCTCGTATAGTATCAGAGTGTCCTGATTCGGAGATCATTGTTATGGCTCTTGATCTCAGTTCTCTCAATTCGGTTAGAAGCTTCGTAAATCAGTTCAACTCTCTCGGTTTGCCTCTCCATCTTCTCATAAACAACGCCGGAAAGTTTGCGCATGAACACGCTCTATCTGAAGACGGAGTTGAAATGACCTTCGCCACTAATTACCTTGGTCATTTTCTGTTGACAAAGTTGTTGGTGAAGACGATGGCGGAAACGGCGAAGGAGACCGGAGTGCAGGGTCGGATAGTGAACGTGTCGTCCAGCATCCACGGGTGGTTTTCCGGCGATGCCATTTCATATCTGGCTCTTATAAGCCGTAACAAAAGCCATTACGACGCCACACGTGCTTATGCTCTTTCCAAGCTCGCCAACGTTTTCCACACTAAGGAGCTTGCACGTAGACTCCAGCAAATGGGAGCAAACGTGACTGTAAACTGTGTTCATCCTGGGATTGTGAGAACCAGACTCACCAGGGAGCGTGAGGGTTTACTCACAGATTTAGTGTTCTTTTTGGCTTCCAAGCTCTTAAAGACCATTCCTCAGGCAGCTGCTACAACATGTTATGTGGCAACTCATCCGAGGCTGTTCGATGTCTCCGGCAAATACTTTGCTGACTGCAACGAAACCTCAACCTCAAAATTGGGATCCAACTCAACTGAAGCCTCAAGGTTATGGGCCACTTCTGAATTCATGATTTCTAGGGGTCCAAAAGCTGCCTTTGACCTACTCAAAGCACCTTGA 1008 0.502 MIDTLKYLLGSAGPSGFGSKSTAEQVTENRADLRSFTAIITGATSGIGAETARVLAKRGVRLILPARSVKAAEDAKARIVSECPDSEIIVMALDLSSLNSVRSFVNQFNSLGLPLHLLINNAGKFAHEHALSEDGVEMTFATNYLGHFLLTKLLVKTMAETAKETGVQGRIVNVSSSIHGWFSGDAISYLALISRNKSHYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKTIPQAAATTCYVATHPRLFDVSGKYFADCNETSTSKLGSNSTEASRLWATSEFMISRGPKAAFDLLKAP* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3103 335 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Pvu2g3103 335 Pfam short chain dehydrogenase 37 178 IPR002347 -
Pvu2g3103 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 295 IPR036291 -
Pvu2g3103 335 CDD retinol-DH_like_SDR_c_like 37 314 - -
Pvu2g3103 335 Gene3D - 22 323 - -
Pvu2g3103 335 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Pvu2g3103 335 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Pvu2g3103 335 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Pvu2g3103 335 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Pvu2g3103 335 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Pvu2g3103 335 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 325 - -
Pvu2g3103 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Pvu2g3103 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Pvu2g3103 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3103 Pvu-Chr2 46383281 46386641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3103 28 247 Acyl Lipid Metabolism Gene Families AT1G63380 27.897 7.29e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3103 - - gmx:102670316 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3103 2 46383281 46386641 Pvu2g3103 2 46383281 46386641 ECH