Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00720 TCCAAACTCATCATCGTGGACACACCCACAACGAGTTTGTTTAACCTTCTCTGCCGTACCACAAAGTGGTGGGTGTGGGTAGGTATTCCTGTGGATGCACAGTGCTGACTGAACAAACAAAGACAGCGAGGATCCCTATGAAATTGTTTCGATTTCTGCATCAAGCTCCAATTTTGAAGACTACCCAGGTCAGCTAACATCGCATGTTTTTCTTTCCTTTTCTTCCTCCTCTCGCTTTTCCACGTTTCATCCTCCAAAATCCAAATCCATGCTTTTCTCTTTTTTGGTTCCCCCTTTGTTTCTCTCCCGGATTCACCACCATACTGTTTCTGATTTTTCTGTGATTTTCAGATACCCTTTTCCCCCAATTAAAGTAAGACCCATCCATTCAGCTCAGAATTGCTTATTCGTGCAAGAAAGGAATCTGTTTTGGATTAGAGGTGGGATATGGAAGAGGAAGAGGATCAATTCTATGATACTCGTGAGGAGTTGTGTTCTGTCTCTGATGGGGGTTCTGATTGTTCTGAATCAGATGAATCTAGTTCTGCTAATAACGGACATGTTACTAGGTACCGGGTTTGGGCAGAAAACCTTGAAAGTGTTCACCAGCGACGCCTCAATTTCCTGAGATGGATGGGTCAAGAGTCTGATTTGAATTATTCAATGAAAGGAGAGGAGTTGGGGAATCAACCTTGTGGTATTGACCGAATCACTGCAACAAGTGGGGCGGTGTTGAGAACTTCTCTTCCTGTTGAGGAGGGTCTTCCCTTAACCTCAAACCAGATTGTATTGAATTCCTTATCCGATGAGGCTTCAGGCTCGAGAGAAAATCTCGAGAATTCCCTCTGTATGATAAGGAATTTGGATGATGGAACACAGTATATCGTGGATAAGCTTGGTCAGGATGGAACTCTTAGTACACTGCGTGTTTTGGGTTCAAACCAATTGATTAGCCTGGAGGAGTTTCAGAGAAACATTGGGGCTTCATCCTTGGTTCGAACACATTTGCGGAGAGATACTGAAAACACAAAGTTGTTGGGAGTTGGGAAAAGGAAAATGAAGAGGGGTTGGCTAAGGAAACTAGATTCTATTGCTTGTTTTGTTCATAATCATGGGCATGATGAAACTAAATGCAAAGACTGTGATTCAGTGGACAGAACTGGGATACAAAGGGTTCGGGTTCATTCCTATAGGAAGCGGTTTAAGGAGCTTTCCTCCCTTTACACTGAACAGGAGTTTAAAGCACACAAGGGTATTATTTTGACAATGAAGTTCAGTCTAGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATGGTACGCGTGTGGAAGGTGGTTGAGGATGAAAGATCAAGCGAATTGGACATTCTGGACAATGATCCGGCAAATATATATTTTAAAATAAACAATTTTTCGTGCATTGCTCCCCTTGATGTAGATAAAAAGAAATTAGTTAAAACAGAGAAGTTGAGGAGATCCTCTGAAGCAACGTGTGTGATTATCCCGCCAAAGACCTTCCGCATATCAGCAAAACCTTTGCATGAGTTTCAAGGGCACAGTGGTGACATTTTAGACCTTGCTTGGTCTAAAAGAGGGTTTCTACTGTCATCCTCTGATGATAAGACCGTTCGCCTTTGGCATGTAGGAATCAACAGATGTCTTAGAGTTTTCTCCCACAATAATTATGTGACATGTGTCAATTTCAATCCCGTCAACGATAATTTTTTCATCAGTGGTTCAATTGATGGAAAAGTTCGAATCTGGGAAGTTGTTCACTGTAGGGTTAGTGATTACATTGATATCAGAGAGATAGTCACAGCTGTGTGCTTCCGCCCTGATGGAAAGTTTTTTTATACTTTGGAATACACTTGTCTAGATAATCATCTGCAATTGGATGCTCAGTTGAGTTTACCAGGCAAAAAGAAGACATCAGGGAAAAAGATCACTGGCTTTCAGTTTTCACCAAGTGACCCGAGCAAACTATTGGTTGCTTCTGCTGATTCGCATATCTGTATACTTTCTGGAGTTGACATAATCTACAAATTCAAGGGTAGGTTAATACGCCTAAGAAGTGCAGGTCAGATGCATGCTTCCTTCACCATTGATGGGAAACATATTGTTTCAGTTAGCGAGGATTCAAATGTATGTATCTGGAATCACAATGGTCAGGACAGGAATACTTCCAAAGCAAAGAAAGTTTGGTCTTCGGAGAGTTTTCTTTCCCACAACGCAGCAATCGCCGTACCTTGGTGTGGCATTGAGTCAATGCCAGGAACACTCCTGTCGCCGTCACTAGGAGAGGATGTGAATCAGAGGTGTTCTCTTCCTTCACCTGATTGTTTCTTCCTGAGTCGCGGATTTCTGTCAGAGTTAATCCCCAAGGTTTCTGCCACATGGCCTGAGGAGACCCTTGTGGACTCATGTCAAACTCAAACTATGGTTTCTCCAACCATGTGTAAATCAGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCCCACTTGTGGGGCCAAGTAATTGTGACAGCAGGATCGGATGGATGCATCAGAGTGTACCAGAATTACGGGCTACCCGTCCGTGTTTAAAACCAAGGTTTTTGGAGCATTCTAATGTTACTTGCTATTCTCACATAGCATTAGAGGGTTCTATGATAATAATAGAATAGAATTTGCTACTATGCAAAGCTTCATTGTTTTCAACTGTAATAGTTTACTAGCCAGGGCAATTCTTCAGTTGCTGATTGGGGATTGCCCCCACACAATAATATTCTTTATACCAAGTCAATATCAATTATATGATTCTTTAATTTTTAAGGACTGTTGGTTGAGAGAATGTAAGTTTCAGTTTTGCTGATGGTCCTGGTCGAAATGTAATTCATGATCATGTGTATAACTAACTATATACCGAGAGCATTGTATTCTATTTTAATTTATACAAGATTTTTTTGTTTACACAGCTTCAATA 2977 0.4138 MEEEEDQFYDTREELCSVSDGGSDCSESDESSSANNGHVTRYRVWAENLESVHQRRLNFLRWMGQESDLNYSMKGEELGNQPCGIDRITATSGAVLRTSLPVEEGLPLTSNQIVLNSLSDEASGSRENLENSLCMIRNLDDGTQYIVDKLGQDGTLSTLRVLGSNQLISLEEFQRNIGASSLVRTHLRRDTENTKLLGVGKRKMKRGWLRKLDSIACFVHNHGHDETKCKDCDSVDRTGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGIILTMKFSLDGKYLASGGEDGMVRVWKVVEDERSSELDILDNDPANIYFKINNFSCIAPLDVDKKKLVKTEKLRRSSEATCVIIPPKTFRISAKPLHEFQGHSGDILDLAWSKRGFLLSSSDDKTVRLWHVGINRCLRVFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVHCRVSDYIDIREIVTAVCFRPDGKFFYTLEYTCLDNHLQLDAQLSLPGKKKTSGKKITGFQFSPSDPSKLLVASADSHICILSGVDIIYKFKGRLIRLRSAGQMHASFTIDGKHIVSVSEDSNVCIWNHNGQDRNTSKAKKVWSSESFLSHNAAIAVPWCGIESMPGTLLSPSLGEDVNQRCSLPSPDCFFLSRGFLSELIPKVSATWPEETLVDSCQTQTMVSPTMCKSEYKFLRSACKGMSNSHLWGQVIVTAGSDGCIRVYQNYGLPVRV 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00720 716 SUPERFAMILY WD40 repeat-like 258 707 IPR036322 GO:0005515
Pste3g00720 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 408 IPR001680 GO:0005515
Pste3g00720 716 Gene3D - 189 317 IPR015943 GO:0005515
Pste3g00720 716 MobiDBLite consensus disorder prediction 21 35 - -
Pste3g00720 716 Gene3D - 489 709 IPR015943 GO:0005515
Pste3g00720 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Pste3g00720 716 Gene3D - 333 487 IPR015943 GO:0005515
Pste3g00720 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 442 IPR001680 GO:0005515
Pste3g00720 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Pste3g00720 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 400 - -
Pste3g00720 716 PANTHER WD REPEAT DOMAIN 44 2 713 IPR040324 -
Pste3g00720 716 SMART WD40_4 402 441 IPR001680 GO:0005515
Pste3g00720 716 SMART WD40_4 257 296 IPR001680 GO:0005515
Pste3g00720 716 SMART WD40_4 535 571 IPR001680 GO:0005515
Pste3g00720 716 SMART WD40_4 361 399 IPR001680 GO:0005515
Pste3g00720 716 SMART WD40_4 482 526 IPR001680 GO:0005515
Pste3g00720 716 SMART WD40_4 668 708 IPR001680 GO:0005515
Pste3g00720 716 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Pste3g00720 716 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Pste3g00720 716 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Pste3g00720 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Pste3g00720 716 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Pste3g00720 716 Pfam WD domain, G-beta repeat 363 398 IPR001680 GO:0005515
Pste3g00720 716 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Pste3g00720 716 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00720 Pste-Chr3 4564978 4569425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00720 259 467 Miscellaneous Gene Families AT5G08390 23.431 2.19e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00720 3 4564978 4569425 Pste3g00720 3 4564978 4569425 ECH