Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00418 ATGATCGACACACTTCGATACCTTCTCGGCTCAGCCGGTCCAAGCGGCTTCGGCTCCAAATCCACCGCCGAACAAGTCACCGAAAACCGCGCCGATCTCCGCTTCCTCACCGCCATCATCACCGGTGCTACGTCTGGAATCGGAGCTGAAACGGCGCGTGTGTTGGCGAAACGTGGAGCGAGGTTGATTCTGCCGGCGCGTAGTGTGAAAGCTGCGGAAGACGCGAAAGCGCGTATAGTATCAGAGTGTCCTGATTCGGAGATCATTGTTATGGCTCTTGATCTAAGTTCGCTCAATTCGGTTAGAAGCTTCGTCAGTCAGTTCCATTCTCTCGGTTTGCCTCTCCATCTTCTCATAAACAACGCCGGGAAGTTTGCGCATGAACACGCTATATCTGAAGACGGAGTTGAAATGACCTTCGCCACTAATTACCTTGGCCATTTTCTGTTGACAAAGTTGTTGGTGAAGACGATGGCTGAAACGGCGAAGGAGACGGGAGTGCAGGGTCGGATAGTGAACGTGTCGTCCAGCATTCACGGGTGGTTTTCCGGCGATGCGGTTTCGTATCTGGCTCTTATAAGCCGTAACAAAAGCCATTACGACGCCACACGTGCTTATGCTCTTTCCAAGCTCGCTAACGTTTTCCACACTAAGGAGCTTGCACGTAGACTCCAGCAAATGGGGGCCAACGTTACTGTTAACTGTGTTCATCCTGGGATTGTGAGAACCAGACTCACTAGGGAGCGTGAGGGTTTACTCACAGATTTAGTGTTTTTTTTGGCTTCCAAGCTCCTAAAGACCATTCCTCAGGCAGCTGCTACAACATGTTATGTGGCAACTCATCCGAGGCTGTCCGATATCTCCGGCAAATACTTTGCTGACTGTAACGAAACCTCAACCTCAAAATTGGGATCCAACTTAGCTGAAGCCACAAGGTTATGGGCCACTTCTGAATTCATGATTTCTAGGGGTCCAAAGGCTGCTTTTGACCTACTCAAGCACCTTGAATTTTGA 1014 0.501 MIDTLRYLLGSAGPSGFGSKSTAEQVTENRADLRFLTAIITGATSGIGAETARVLAKRGARLILPARSVKAAEDAKARIVSECPDSEIIVMALDLSSLNSVRSFVSQFHSLGLPLHLLINNAGKFAHEHAISEDGVEMTFATNYLGHFLLTKLLVKTMAETAKETGVQGRIVNVSSSIHGWFSGDAVSYLALISRNKSHYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKTIPQAAATTCYVATHPRLSDISGKYFADCNETSTSKLGSNLAEATRLWATSEFMISRGPKAAFDLLKHLEF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00418 337 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Viun3g00418 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Viun3g00418 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Viun3g00418 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Viun3g00418 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Viun3g00418 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 299 IPR036291 -
Viun3g00418 337 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Viun3g00418 337 CDD retinol-DH_like_SDR_c_like 37 314 - -
Viun3g00418 337 Gene3D - 23 323 - -
Viun3g00418 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Viun3g00418 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Viun3g00418 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Viun3g00418 337 Pfam short chain dehydrogenase 37 178 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00418 Viun-Chr3 2524020 2527068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00418 39 292 Acyl Lipid Metabolism Gene Families AT1G24360 27.444 7.79e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00418 - - gmx:102670316 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00418 3 2524020 2527068 Viun3g00418 3 2524020 2527068 ECH