Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03425 ATGATCGACACACTTAAATACCTTCTCGGCTCAGCCGGTCCAAGCGGCTTCGGCTCCAAATCCACCGCCGAACAAGTCACCGAAAACCGCGCTGATCTCCGCTCCTTCACCGCCATCATCACCGGTGCCACGTCTGGAATCGGAGCTGAAACAGCGCGTGTGTTAGCAAAACGTGGAGTCAGGCTGATTCTGCCGGCGCGTAGTGTGAAAGCTGCGGAAGACGCAAAAGCGCGTATAGTATCAGAGTGTCCTGATTCGGAGATCATTGTTATGGCTCTTGATCTCAGTTCTCTCAATTCGGTTAGAAGCTTCGTAAATCAGTTCAACTCTCTCGGTTTGCCTCTCCATCTTCTCATAAACAACGCCGGAAAGTTTGCGCATGAACACGCTATATCTGAAGACGGAGTTGAAATGACCTTCGCCACTAATTACCTAGGTCATTTTCTGCTGACAAAGTTGTTGGTGAAGACGATGGCGGAAACGGCGAAGGAGACAGGAGTGCAGGGTCGGATAGTGAACGTGTCGTCCAGCATCCACGGGTGGTTTTCCGGCGATGCCATTTCGTATCTGGCTCTTATAAGCCGTAACAAAAGCCATTACGACGCCACACGTGCTTATGCTCTTTCCAAGCTCGCCAACGTTTTCCACACTAAGGAGCTTGCACGTAGACTCCAGCAAATGAGGGCCAACGTGACTGTGAACTGTGTTCATCCTGGGATTGTGAGAACCAGACTCACCAGGGAGCGTGAGGGTTTACTCACAGATTTAGTGTTCTTTTTGGCTTCCAAGCTCTTAAAGACCATTCCTCAGGCAGCTGCTACAACATGTTATGTGGCAACTCATCCGAGGCTGTTCGATGTCTCCGGCAAATACTTTGCTGACTGCAACGAAACCTCAACCTCAAAATTGGGATCCAACTCAACTGAAGCCTCAAGGTTATGGGCCACTTCTGAATTCATGATTTCTAGGGGTCCAAAAGCTGCCTTTGACCTACTCCAAGCACCTTGA 1008 0.499 MIDTLKYLLGSAGPSGFGSKSTAEQVTENRADLRSFTAIITGATSGIGAETARVLAKRGVRLILPARSVKAAEDAKARIVSECPDSEIIVMALDLSSLNSVRSFVNQFNSLGLPLHLLINNAGKFAHEHAISEDGVEMTFATNYLGHFLLTKLLVKTMAETAKETGVQGRIVNVSSSIHGWFSGDAISYLALISRNKSHYDATRAYALSKLANVFHTKELARRLQQMRANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKTIPQAAATTCYVATHPRLFDVSGKYFADCNETSTSKLGSNSTEASRLWATSEFMISRGPKAAFDLLQAP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03425 335 Pfam short chain dehydrogenase 37 178 IPR002347 -
Phco4g03425 335 Gene3D - 22 323 - -
Phco4g03425 335 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Phco4g03425 335 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Phco4g03425 335 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Phco4g03425 335 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Phco4g03425 335 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Phco4g03425 335 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Phco4g03425 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 299 IPR036291 -
Phco4g03425 335 CDD retinol-DH_like_SDR_c_like 37 314 - -
Phco4g03425 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Phco4g03425 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Phco4g03425 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03425 Phco-Chr4 54478011 54480151 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03425 4 54478011 54480151 Phco4g03425 4 54478011 54480151 ECH