Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00331 ATGCTTCAAACGGTTAAATACTTGATCGGATCGGCAGGTCCGAGTGGATTCGGGTCAAAATCAACCGCCGAACAAGTTACTCAGAGCTTCGGCGGCGATCTCCGTTCCATCACCGCCATCATCACAGGTGGTACTTCTGGAATCGGAGCAGAAACGGCGCGTGTTTTGGCATCGCGTGGTGCTAGGGTGATTCTTCCGGCGCGTAGTATAAAAAATGCGGAAGAAACAAGAGGTAGAATCGTAACGGAATTTCCTGAAGCGGAGATTATTGTTATGGCACTCGATCTCAGTTCTATCAATTCTGTTACAAATTTCGTTACTCGCTTTCACTCCTTCGATTTTCCTCTCAATCTCCTCATAAACAATGCTGGAAAATTTGCAGAGAAGCATGCGATTTCCGAGGATGGAGTTGAAATGACCTTTGCCACTAATTATCTAGGTCATTTTTTGTTAACAAAGTTGTTGATGAAGACGATGGTTGAAACGGCAAAGAAGACAGGAATAGAAGGGAGGATAGTGAACGTGTCGTCTGCTATACACAATTGGTTTACTGGCGACGTCATCTCCTATTTGGCTCTTATATGCCGCAACAAATTAAGCCACTATGATGCCACACGTGCTTATGCTCTTTCCAAACTCGCCAATGTCTTCCACACAAACGAGCTTGCCCGCAGACTCAAGCAAATGGATGCCAATGTGACTGTGAACTGCGTTCATCCTGGGGTCGTGAGAACCAGACTCACCAGAGAGCGTGAAGGCTTTCTTACAGatttagttttctttttggCTTCCAAGCTCTTAAAGACTATTCCTCAGGCAGCTGCAACAACATGTTATGTAGCAACCCACCCAAGGCTCTTCAATGTGTCCGGCAAGTACTTCGCTGACTGCAACGAAGCCTCAACTTCCAAATCAGGATCCAACTCAACCGAAGCTGCAAGGTTATGGGTGGTTTCCGAACTCATGATTTCTAAGGGTCCAAAAGCTGCCTTTGACTTAATTAATCACCTTGAATTTTGA 1020 0.45 MLQTVKYLIGSAGPSGFGSKSTAEQVTQSFGGDLRSITAIITGGTSGIGAETARVLASRGARVILPARSIKNAEETRGRIVTEFPEAEIIVMALDLSSINSVTNFVTRFHSFDFPLNLLINNAGKFAEKHAISEDGVEMTFATNYLGHFLLTKLLMKTMVETAKKTGIEGRIVNVSSAIHNWFTGDVISYLALICRNKLSHYDATRAYALSKLANVFHTNELARRLKQMDANVTVNCVHPGVVRTRLTREREGFLTDLVFFLASKLLKTIPQAAATTCYVATHPRLFNVSGKYFADCNEASTSKSGSNSTEAARLWVVSELMISKGPKAAFDLINHLEF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00331 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 297 IPR036291 -
Tsu02g00331 339 Gene3D - 24 326 - -
Tsu02g00331 339 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Tsu02g00331 339 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Tsu02g00331 339 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Tsu02g00331 339 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Tsu02g00331 339 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Tsu02g00331 339 PANTHER RETINOL DEHYDROGENASE 4 328 - -
Tsu02g00331 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Tsu02g00331 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Tsu02g00331 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Tsu02g00331 339 CDD retinol-DH_like_SDR_c_like 38 316 - -
Tsu02g00331 339 Pfam short chain dehydrogenase 38 251 IPR002347 -
Tsu02g00331 339 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00331 Tsu-Chr2 2799136 2803714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00331 20 294 Acyl Lipid Metabolism Gene Families AT1G24360 26.460 5.81e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00331 - - gmx:100794347 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00331 02 2799136 2803714 Tsu02g00331 02 2799136 2803714 ECH