Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02142 ATGCTCGAGACCGTTAAATACCTTCTCGGCTCCGCCGGTCCAAGCGGCTTCGGGTCCAAATCCACCGCCGAACAAGTCACGGAAAACCGCGCCGATCTCCACTCCATCACCGCCATCATCACCGGTGCTACGTCTGGAATCGGAGCTGAAACGGCGCGTGTGTTAGCGAAGCGTGGTGCGAGGCTGGTTCTGCCGGCGCGTAGCATGAAAGCCGCGGAAGACGCCAAAGCGCGCATAGTGTCAGAGTGTCCTGATTCGGAAATCATCGTTATGTCTCTTGATCTCAGTTCTCTGAATTCGGTTACAACCTTCGTTGCTCACTTTCACTCTCTCGGTTTGCCTCTCCATCTCCTCATAAACAACGCTGGAAAGTTCGCACACGAGCATGCTATCTCTGAGGATGGAGTTGAAATGACTTTTGCCACTAATTACCTAGGTCATTTTGTGTTGACGAATTTGTTGGTGAAAAAGATGGTGGAAACGGCGAAGGAGACAGGAGTGCAGGGTAGGATAGTGAACGTGTCGTCGAGCATCCACGGGTGGTTTTCCGGCGATGCAATTTCATATCTGGCTCTTATAAGCCGCAACAAAAGGCATTACGACGCCACACGTGCTTATGCTCTTTCCAAGCTCGCCAACGTTTTCCACACCAAGGAACTTTCCCGTAGACTCCAGCAAATGGGGGCCAACGTCACTGTGAATTGTGTTCATCCTGGGATCGTCAGAACCAGACTCACTAGAGAGCGTGAGGGCTTACTCACAGATTTGGTGTTCTTTTTGGCTTCCAAGCTCTTGAAGACCATTCCTCAGGCAGCTGCTACGACATGTTATGTGGCCACTCATCCAAGGCTTTTCAATGTCTCCGGCAAGTACTTTGCTGACTGTAACGAAACTTCAACCTCAAAATTGGGATCCAACTCAACTGAAGCTGCAAGGCTATGGGCCGCATCCGAATTCATGATTTCTAGGGGTCCAAAAGCTGCCTTTGACCTACTTAGGCACCTTGAATTTTGA 1014 0.5049 MLETVKYLLGSAGPSGFGSKSTAEQVTENRADLHSITAIITGATSGIGAETARVLAKRGARLVLPARSMKAAEDAKARIVSECPDSEIIVMSLDLSSLNSVTTFVAHFHSLGLPLHLLINNAGKFAHEHAISEDGVEMTFATNYLGHFVLTNLLVKKMVETAKETGVQGRIVNVSSSIHGWFSGDAISYLALISRNKRHYDATRAYALSKLANVFHTKELSRRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKTIPQAAATTCYVATHPRLFNVSGKYFADCNETSTSKLGSNSTEAARLWAASEFMISRGPKAAFDLLRHLEF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02142 337 Gene3D - 22 323 - -
Gma05g02142 337 CDD retinol-DH_like_SDR_c_like 37 314 - -
Gma05g02142 337 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 325 - -
Gma05g02142 337 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Gma05g02142 337 Pfam short chain dehydrogenase 37 178 IPR002347 -
Gma05g02142 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Gma05g02142 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Gma05g02142 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Gma05g02142 337 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Gma05g02142 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Gma05g02142 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 296 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02142 Gma-Chr5 42568888 42571384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02142 38 249 Lipid Metabolism Gene Families AT1G67730 29.545 5.22e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02142 - - gmx:102670316 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02142 05 42568888 42571384 Gma05g02142 05 42568888 42571384 ECH
Gma05g02142 05 42568888 42571384 Gma08g00249 08 2115970 2118021 GST