Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0805 ATGGTGGACACTCTCAAGTACCTCATCGGCTCGCCTGGACCTTCCGGCTTTGGCTCTAGCTCCACCGCCGAGCAAGTCACCGGAACCGCCTCCTCCCATTTTTCCTCTCTCACTGCCATCATTACCGGCGCGACGTCTGGAATCGGAGCTGAGACGGCGAGGGTTCTGGCGAAGCGAGGAGTGAGGTTGATTCTGCCGGCTCGGACCCTGAAAGCTGCCGAAGACACTAAAGCTCGTATTCTCTCTGAGTCTCCGAACTCAAACATCACTGTGATGCCTCTCGATCTTAGTTCTCTCATCTCTGTTCGTTCCTTCGTTTCTCGGTTCCATTCCCTCCATTTACCTCTCAACCTTCTCATAAACAACGCCGGGAAGTTCGCGGAACATCACGCAATCTCCGAAGATGGATTTGAGATGACGTTCGCCACGAATTATCTAGGTCATTTTCTGTTGACGGAGTTGTTGTTGAAGACGATGGGGAAAACGGCAGAGAAGTCGGGGATCCAAGGACGGATCGTGAACGTGTCTTCCAACGTACATGGCTGGTTTTCCGGCGACATTATCCGATATCTAGCTCTTATTACCCGCGACATCAGCCATTACGACGCCACACGTGCTTATGCTCTGTCGAAGCTCGCCAACATCTTACACACAAGGCATCTTGCTCTCAAACTCCAGGAAATGGGAGCGAATGTGACAGTGAATTGCGTTCATCCAGGGATTGTGAGGACGAGGCTCACCAGGGAACGTGAAGGCTGGCTTACAGATATAGCGTTCTTGCTGACTTCCAAATTCTTGAAAACCATTCCCCAGGCTGCAGCAACGACATGTTACGTGGCGACGCATCCGAGGCTGTTGAATGTGTCCGGTATGTACTTTGCTGACTGCAACGAAGCTTCCATGTCAAAACTAGGATCCAGTTGTACGGAAGCTGCTAGGTTGTGGTCAGCTTCCGAATCCATGATCTCTGAAGGCCCCAAATCTCTTCTGGATCTCCTCCACAACCATGAATCAAATTGA 1020 0.5127 MVDTLKYLIGSPGPSGFGSSSTAEQVTGTASSHFSSLTAIITGATSGIGAETARVLAKRGVRLILPARTLKAAEDTKARILSESPNSNITVMPLDLSSLISVRSFVSRFHSLHLPLNLLINNAGKFAEHHAISEDGFEMTFATNYLGHFLLTELLLKTMGKTAEKSGIQGRIVNVSSNVHGWFSGDIIRYLALITRDISHYDATRAYALSKLANILHTRHLALKLQEMGANVTVNCVHPGIVRTRLTREREGWLTDIAFLLTSKFLKTIPQAAATTCYVATHPRLLNVSGMYFADCNEASMSKLGSSCTEAARLWSASESMISEGPKSLLDLLHNHESN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0805 339 Gene3D - 24 325 - -
Lele52g0805 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 300 IPR036291 -
Lele52g0805 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Lele52g0805 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Lele52g0805 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Lele52g0805 339 PANTHER RETINOL DEHYDROGENASE 14 322 - -
Lele52g0805 339 CDD retinol-DH_like_SDR_c_like 38 315 - -
Lele52g0805 339 Pfam short chain dehydrogenase 201 251 IPR002347 -
Lele52g0805 339 Pfam short chain dehydrogenase 38 179 IPR002347 -
Lele52g0805 339 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Lele52g0805 339 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Lele52g0805 339 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Lele52g0805 339 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Lele52g0805 339 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0805 Lele-ChrLele52 5104083 5105872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0805 38 257 Acyl Lipid Metabolism Gene Families AT1G63380 27.753 9.53e-11 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0805 52 5104083 5105872 Lele52g0805 52 5104083 5105872 ECH
Lele49g0779 49 4723157 4724908 Lele52g0805 52 5104083 5105872 hybridization
Lele50g0817 50 5042231 5044838 Lele52g0805 52 5104083 5105872 hybridization