Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03426 ATGGAAGGGGGAGAGGATCAATTTTATGATACTCGTGAGGAATTGTGTTCTGCCTCTGATGGGGGTTCGGATTGTTCAGAATCAGATGAATCTAGTTCTGGTATTAACAGACATGTTACCAGGCACAAGGCTTGGGCAAAAAACCTTGAAAGTGTTAACCAAAGACGCCTCAATTTCTTGAGATGGATGGATTTGGAGTCTGATTTAAATTATTCACCCAAGGGAGAGGAGTTTGAAGATCAACCTTGTGGGATTGACCGAATCACTGCAACAAGTGGGGCGGTGTTGAGGACTTCGCTTGCTGTTGAGGAGGGTCTTCCCTCAACCTCAAACCAGATTGTGTTGGATTCCCTGTCTGGTGAGGCTTCCGGTTCCCGAGAAAATCGCGATAATTTGGCGTGTATGATAAGGAATTTGGATGATGGAACACAGTATATTGTGGATAAGCTGGGTCAGGATGGAACTCTTGGTACCCTGCGTGTTTTGGGTTCAAACAAATTGATTAGCTTGGAGGATTTTCAGAGAAATACTTTGCCTTCATCGCTGGTTCGCAGACATTTGCAGAGAGATGCTGAAAACACAAGTTTGTTAGGAGTTGCAAAAAGAAAAATGAAGAGAGGTTGGCTAAGGAAACTGGATTCTATTGCTTGTTTTGTTCATAATCATGGGCTTCATGAAACTAAATGCAAAGACTGTGATTCAGTGGATAGAAGTGGGATACAAAGAGTTCGAGTTCATTCGTATAGGAAGCGGTTTAAGGAGCTTTCATCCCTTTACACTGAGCAGGAGTTCAAAGCACATAAGGGTGTTATTTTGACAATGAAATTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATGGTACGTGTGTGGAAGGTGGTTGAGGATGAGAGATCAAGTGAACTGGACATTCTGGACAATGATCCGTCAAATATATATTTCAAAATAAATAATTTTTCATGTGTTGCTCCCCTTGGTGTAGATAAAGAGAAATTAGTCAAAACGGAGAAGTTGAAAAGGTCCCCCGAAGCAACCTGTGTGATTGTCCCACCAAGGACCTTCCGTATATCGGCAAAGCCTTTGCACGAGTTCCAAGGTCACAGTGGTGACATTTTGGACCTTGCTTGGTCCAAAAGAGGGTTTCTACTGTCCTCCTCTGTTGATAAGACAGTGCGCCTATGGCATGTGGGAATTGACAGATGTCTTAGAGTTTTCTCCCACAATAATTATGTGACATGCGTGAATTTCAATCCCATCAATGATAATTTTTTCATCAGTGGCTCAATAGATGGAAAAGTGCGCATCTGGGAAGTTGTTCACTGTAAGGTCAGTGATTATATTGATATCAGAGAGATAGTCACAGCTGTGTGCTTCCGTCCAGATGGAAAGGGCACAATTGTGGGCACCATGGCAGGCAATTGTCGTTTCTACGATATCCAAGATAATCATATGCAATTGGATGCTCAGTTGTGTTTACGAGGAAAAAAGAAGACATCTGGGAAAAGGATCACTGGTGTTCAGTTTTCACCAACTGACCCAAGCAAATTATTGGTTGCTTCTGCTGATTCACATGTCTGTATACTTTCTGGAGTTGACATAATCTACAAATTCAAGGGCCTAAGAAGTGCAGGTCAGATGCATGCTTCCTTCACCACTGACGGGAAACATATCATCTCCGTTAGCGAGGATTCAAATGTATGTATCTGGAATTACACTGGCCATGATAGGAGTACTTCCAAGGCAAAGAAGATTTGGTCTTCAGAGAGTTTTCTCTCCCACAACTCAGTAATCGCTGTACCTTGGTGTGGCATTGAGTCAATCCCAGGAACACTCTTATCCCCTTCGCTAGGAGAGGATGCAAATCAGAGGTGTTCGTTGCCTTCACCGGATTGTTTCTTCTTGAGTCGGGGATTTTTGTCAGAGTTGATCCCAAAGGTTTCTGCTACGTGGCCCGAGGAGACGCTTGTGGACTCAAATCAAACATTAACTGTTGTTTCTCCTACAATGTGTAAATCAGAGTACAAGCTCTTGAAAAGTGCTTGTAAGGGAATGTCTAATTCCCACTTGTGGGGCCAAGTAATTGTGACAGCAGGATGGGATGGATACATAAGAGTGTATCAGAATTATGGATTACCTGTTCGTGGCTGA 2160 0.4301 MEGGEDQFYDTREELCSASDGGSDCSESDESSSGINRHVTRHKAWAKNLESVNQRRLNFLRWMDLESDLNYSPKGEEFEDQPCGIDRITATSGAVLRTSLAVEEGLPSTSNQIVLDSLSGEASGSRENRDNLACMIRNLDDGTQYIVDKLGQDGTLGTLRVLGSNKLISLEDFQRNTLPSSLVRRHLQRDAENTSLLGVAKRKMKRGWLRKLDSIACFVHNHGLHETKCKDCDSVDRSGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGEDGMVRVWKVVEDERSSELDILDNDPSNIYFKINNFSCVAPLGVDKEKLVKTEKLKRSPEATCVIVPPRTFRISAKPLHEFQGHSGDILDLAWSKRGFLLSSSVDKTVRLWHVGIDRCLRVFSHNNYVTCVNFNPINDNFFISGSIDGKVRIWEVVHCKVSDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYDIQDNHMQLDAQLCLRGKKKTSGKRITGVQFSPTDPSKLLVASADSHVCILSGVDIIYKFKGLRSAGQMHASFTTDGKHIISVSEDSNVCIWNYTGHDRSTSKAKKIWSSESFLSHNSVIAVPWCGIESIPGTLLSPSLGEDANQRCSLPSPDCFFLSRGFLSELIPKVSATWPEETLVDSNQTLTVVSPTMCKSEYKLLKSACKGMSNSHLWGQVIVTAGWDGYIRVYQNYGLPVRG 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03426 719 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Phco4g03426 719 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Phco4g03426 719 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Phco4g03426 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Phco4g03426 719 Gene3D - 253 492 IPR015943 GO:0005515
Phco4g03426 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Phco4g03426 719 Gene3D - 493 608 IPR015943 GO:0005515
Phco4g03426 719 PANTHER WD REPEAT DOMAIN 44 4 716 IPR040324 -
Phco4g03426 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 408 IPR001680 GO:0005515
Phco4g03426 719 SUPERFAMILY WD40 repeat-like 258 710 IPR036322 GO:0005515
Phco4g03426 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 400 - -
Phco4g03426 719 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Phco4g03426 719 Pfam WD domain, G-beta repeat 363 398 IPR001680 GO:0005515
Phco4g03426 719 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Phco4g03426 719 MobiDBLite consensus disorder prediction 1 36 - -
Phco4g03426 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 442 IPR001680 GO:0005515
Phco4g03426 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Phco4g03426 719 SMART WD40_4 361 399 IPR001680 GO:0005515
Phco4g03426 719 SMART WD40_4 443 482 IPR001680 GO:0005515
Phco4g03426 719 SMART WD40_4 402 441 IPR001680 GO:0005515
Phco4g03426 719 SMART WD40_4 534 574 IPR001680 GO:0005515
Phco4g03426 719 SMART WD40_4 489 533 IPR001680 GO:0005515
Phco4g03426 719 SMART WD40_4 671 711 IPR001680 GO:0005515
Phco4g03426 719 SMART WD40_4 257 296 IPR001680 GO:0005515
Phco4g03426 719 FunFam WD repeat-containing protein 44 isoform A 251 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03426 Phco-Chr4 54487115 54490798 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03426 4 54487115 54490798 Phco4g03426 4 54487115 54490798 ECH