Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00417 ATGGATGGGGGAGAGGATCAGTTTTATGATACTCGTGAGGAATTGTGCTCTGTCTCTGATGGGAGTTCGGATTGTTCAGAATCAGATGAATCTAGTTCTGGTAATAACGGACATGTTACTAGGCACAAGGTGTGGGCAAAAGACCTTGCAAGTGTTAACCAGAGACGCCAGAATTTCTTGAGATGGATGGGTTTGGAGTCTGATTTGGATTATTCAACCAAGGGAGAGGAGTTTCAAGATCAACCTTGTGGGATTGACCGAATCACTGCTACAAGTGGGGCGGTTTTGAGGACTTCTCTTGCTGTTGAGGAGGGTCTTCCCTCTACCTCAAACCAGATTGTGCTGGATTCCTTGTCTGGTGAGGCTTCCGGTTCCCGTGAAAATCGCGAGAATTCGGCGTGTATGATAAGGAATTTGGATGATGGAACACAGTATATTGTGGATAAGCTGGGTCAGGATGGAACTCTAAGTACACTGCGTGTTTTGGGTTCGAACCAATTGATTAGCTTGGAGGAGTTTCAGAGAAATACTGGGCCTTCATCGATGGTTCGCAGACATTTGCAGAGAGATGCTGAAAACACAAGGTTGTTAGGAGTTGGAAAAAGAAAAATGAAGAGGGGTTGGCTAAAGACACTTGATTCTATTGCTTGTTTTGTTCATAATCACGGGCTTGATGAAACTAAGTGCAAAGACTGTGATTCAGTGGATGGAAGTGGGATACAAAGAGTTCGAGTTCATTCGTATAAAAAGCGGTTTAAGGAGCTTTCCTCCCTTTACACGGAGCAGGAGTTTAAAGCACATAAGGGTGTTATTTTGACAATGAAATTCAGTCTTGATGGAAAGTATCTGGCTAGTGGTGGTGAAGATGGGATGGTACGTGTGTGGAAGGTGGTTGAGGATGAGAGATCAAGTGAACTGGACATTCTGGACAATGATCCATCAAATATATATTTCAAAATAAATAATTTTTCATGTATCGCTCCCCTTGGTGTAGATAAAGAAAAATTAGTCAAACCGGAGAAGTTGAGAAGACCCCCTGAAGCAACCTGTGTGATTATCCCACCGAGGACCTTCCGTATATCGGCAAAACCTTTGCACGAATTCCAAGGTCACAGTGGGGACATTTTGGACCTTGCTTGGTCCAAAAGAGGGTTTCTACTGTCATCCTCTGTTGATAAGACAGTGCGCCTATGGCATGTGGGAATTGATAGATGTCTTAGAGTTTTCCCCCACAATAATTATGTGACATGCGTCAATTTCAACCCCATCAATGATAATGTTTTCATCAGTGGCTCAATTGATGGAAAAGTGCGCATCTGGGAAGTTGTTAACAGTAGGGTTAGTGATTACATAGATATCAGAGAGATAGTCACAGCTGTGTGCTTCCGCCCTGATGGAAAGGGCACAATTGTGGGTACCATGGCAGGCAATTGCCGTTTCTATGATATCCAAGATAAACATCTGCAATTGGATGCTCAGTTGTGTTTACGAGGAAAAAAGAAGACATCAGGGAAAAGGATCACTGGCTTTCAGTTTTCACCAACTGACCCGAGCAAATTATTGGTTGCTTCTGCTGATTCACATGTCTGTATACTTTCTGGAGATGACATAATCTACAAATTCAAGGGTTTAAGAAGTGCTGGTCAGATGAATGCTTCCTTCACCACTGATGGGAAACATATCATCTCAGTAAGTGAGGATTCGAATGTATGTATCTGGAATTACAATGGCCATGATAGGAGCAATTCCAAAGCAAAGAAAGTTTGGTCTTCAGAGAGTTTTCTCTCCCACAACGCATCAATCGCTGTACCATGGTGTGGCATTGAGTCAATCCCAGGAACACTCTTATCGCCGTCGCTCGGAGATGATGCAAATCAGAGGTGTTCGCTGCCGTCGCCGGATTGTTTCTTCTTAAGCCGGGGATTTCTGTCAGAGTTGATCCCAAAGGTTTCTGCAACGTGGCCTGAGGAGGCACTTGTGGACTCATGTCAAACACAAACTGTTGTTTCTCCTACAATGTGTAAATCAGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCCCACTTATGGGGCCAAGTAATTGTGACAGCAGGGTGGGATGGATACATAAGAGTGTACCAGAATTATGGATTACCTGTTCGTGGCTGA 2160 0.4366 MDGGEDQFYDTREELCSVSDGSSDCSESDESSSGNNGHVTRHKVWAKDLASVNQRRQNFLRWMGLESDLDYSTKGEEFQDQPCGIDRITATSGAVLRTSLAVEEGLPSTSNQIVLDSLSGEASGSRENRENSACMIRNLDDGTQYIVDKLGQDGTLSTLRVLGSNQLISLEEFQRNTGPSSMVRRHLQRDAENTRLLGVGKRKMKRGWLKTLDSIACFVHNHGLDETKCKDCDSVDGSGIQRVRVHSYKKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGEDGMVRVWKVVEDERSSELDILDNDPSNIYFKINNFSCIAPLGVDKEKLVKPEKLRRPPEATCVIIPPRTFRISAKPLHEFQGHSGDILDLAWSKRGFLLSSSVDKTVRLWHVGIDRCLRVFPHNNYVTCVNFNPINDNVFISGSIDGKVRIWEVVNSRVSDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYDIQDKHLQLDAQLCLRGKKKTSGKRITGFQFSPTDPSKLLVASADSHVCILSGDDIIYKFKGLRSAGQMNASFTTDGKHIISVSEDSNVCIWNYNGHDRSNSKAKKVWSSESFLSHNASIAVPWCGIESIPGTLLSPSLGDDANQRCSLPSPDCFFLSRGFLSELIPKVSATWPEEALVDSCQTQTVVSPTMCKSEYKFLRSACKGMSNSHLWGQVIVTAGWDGYIRVYQNYGLPVRG 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00417 719 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Viun3g00417 719 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Viun3g00417 719 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Viun3g00417 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Viun3g00417 719 Gene3D - 455 714 IPR015943 GO:0005515
Viun3g00417 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 450 IPR001680 GO:0005515
Viun3g00417 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Viun3g00417 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 408 IPR001680 GO:0005515
Viun3g00417 719 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Viun3g00417 719 Pfam WD domain, G-beta repeat 363 398 IPR001680 GO:0005515
Viun3g00417 719 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Viun3g00417 719 MobiDBLite consensus disorder prediction 16 39 - -
Viun3g00417 719 FunFam WD repeat-containing protein 44 isoform A 251 495 - -
Viun3g00417 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Viun3g00417 719 Gene3D - 234 327 IPR015943 GO:0005515
Viun3g00417 719 MobiDBLite consensus disorder prediction 1 39 - -
Viun3g00417 719 SUPERFAMILY WD40 repeat-like 258 710 IPR036322 GO:0005515
Viun3g00417 719 Gene3D - 355 454 IPR015943 GO:0005515
Viun3g00417 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 400 - -
Viun3g00417 719 PANTHER WD REPEAT DOMAIN 44 5 716 IPR040324 -
Viun3g00417 719 SMART WD40_4 534 574 IPR001680 GO:0005515
Viun3g00417 719 SMART WD40_4 443 482 IPR001680 GO:0005515
Viun3g00417 719 SMART WD40_4 361 399 IPR001680 GO:0005515
Viun3g00417 719 SMART WD40_4 671 711 IPR001680 GO:0005515
Viun3g00417 719 SMART WD40_4 489 533 IPR001680 GO:0005515
Viun3g00417 719 SMART WD40_4 402 441 IPR001680 GO:0005515
Viun3g00417 719 SMART WD40_4 257 296 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00417 Viun-Chr3 2514989 2519011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00417 370 562 Miscellaneous Gene Families AT5G08390 23.618 5.46e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00417 - - gmx:100788374 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00417 3 2514989 2519011 Viun3g00417 3 2514989 2519011 ECH