Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0524 ATGCTGGAAACAATTAAATACCTTACGGGGTGGCGTGGTCCAAGCGGCTTTGGATCCAAATCCACCGCCGAACAAGTCACTGAAGGCTGCGCCGATCTCACTTCCATCACTGCTATCATCACCGGTGCTACATCTGGGATCGGAGCTGAAATAGCGAGGGTATTGGCGAAGCGAGGTGCGAGGTTAGTGTTACCGGCGAGGAATCTAAAAGCTGCAGAAGACACAAAAGCTCGCATAATATCTGAGTACCCTGATTCTCATATTATTATAATGCATCTTGATCTAAGTTCTCTCAACTCAGTCAGAAACTTTGTTAATCTCTTTCACTCTTTCGATTTACCTCTCAATCTCCTCATTAACAACGCTGGGAAATTTGCACATGAGCATGCTATCTCAGAGGATGGAATTGAAATGACCTTTGCCACTAATTATCTAGGTCATTTTCTGCTAACAAAGTTGTTACTTGAGAGGATGATTGAAACGGCAAAGAAGACAGGGATACAAGGGAGGATCTTGAACGTGACATCTGGAATACACGGGTGGTTTTCAGGGGATATGATATCTTATCTAAGTCTTATAAGCACCAACAAAAGTCATTACGATGCCACACGTGCTTATGCTCTTTCCAAGCTTGCCAACGTTTTCCACACCAGCGAGCTTGCCCGTAGACTACAGCAAATGGAAGCTAATGTGACAGTGAATTGCGTTCATCCTGGGGTAGTGAGAACCAGACTCACTAGAGAGCGTGAAGGCTTACTTACAGATTTAGTATTCTTTTTGGGTTCCAAGCTGTTAAAGACAATTCCCCAGGCAGCTGCAACGCCATGTTATGTGGCCACACACCCAAGGCTGTTGAATGTGTCGAGTAAATTCTTCCGTGACTGCAACGAAGCCTTCACCTCAAAATTGGGATGCAACTCAACTGAAGAAGAAGGTTTATGGGCTGCTTCTGAATTAATCATTGCTAAGGGTCCAAAAGCTGCTTTTGACTTACTCATGAACCCTCAATTTTGA 1014 0.4428 MLETIKYLTGWRGPSGFGSKSTAEQVTEGCADLTSITAIITGATSGIGAEIARVLAKRGARLVLPARNLKAAEDTKARIISEYPDSHIIIMHLDLSSLNSVRNFVNLFHSFDLPLNLLINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLERMIETAKKTGIQGRILNVTSGIHGWFSGDMISYLSLISTNKSHYDATRAYALSKLANVFHTSELARRLQQMEANVTVNCVHPGVVRTRLTREREGLLTDLVFFLGSKLLKTIPQAAATPCYVATHPRLLNVSSKFFRDCNEAFTSKLGCNSTEEEGLWAASELIIAKGPKAAFDLLMNPQF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0524 337 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Lal23g0524 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 292 IPR036291 -
Lal23g0524 337 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 326 - -
Lal23g0524 337 Pfam short chain dehydrogenase 37 249 IPR002347 -
Lal23g0524 337 CDD retinol-DH_like_SDR_c_like 37 314 - -
Lal23g0524 337 Gene3D - 22 323 - -
Lal23g0524 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Lal23g0524 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Lal23g0524 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Lal23g0524 337 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lal23g0524 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0524 Lal-Chr23 8030586 8036105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0524 38 251 Lipid Metabolism Gene Families AT1G67730 27.027 1.86e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0524 - - gmx:100794347 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0524 23 8030586 8036105 Lal23g0524 23 8030586 8036105 ECH