Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0236 ATGCTTGATGCTCTGAAATACCTCCTCGGCTCATTCGGAGCAAGTGGGTATGGCTCCAAGTCCACTGCCGAAGAGGTAACTGAGAACTGCCCCGATCTGGGCTCCGTCACTGCTGTCATTACTGGTGCGACGTCGGGGATAGGGGCGGAGACGGCCCGGGTGCTGGCGAAGCGCGGGGCGAGGCTAGTGCTGCCGGCGCGGAGCCTGAAGGCTGCGGAGGAAGCGAAGGCTCGTATTGTGGCGGAGTTTCCCAATTCGGAGATCGTCGTCATGGCTCTCGATCTTAGTTCGCTCGACTCGGTTCGATGCTTCGTTTCGGAGTTCGAGTCTCTGGATTTGCCGCTCAATCTCCTCATAAACAACGCCGGGAAGTTCACTCACGAGCATGCTATCTCCGAAGATGGAATCGAGATGACCTTTGCTACCAATTATCTAGGTCATTTTCTATTGACCAAACTGTTACTAAATAAGATGATCGAAACGGCGAAAAAGACCGGCGTTCAAGGTCGCATCGTGAACGTATCGTCGACCATTCACAGCTGGTTTTCCGGCGACGTAATCCGTTATCTGGGGCTGATAACCAGAAACAAAAGTCAATACGATGCGACACGTGCTTATGCTGTCTCGAAGCTCGCCAATGTTTTGCACACCAAGGAACTTGCTCAGAGATTGAAGCAAATGGATGCGAACGTGACTGTGAATTGCGTTCATCCAGGGATCGTGAGAACGAGGCTCACCAGAGAAACCGAAGGCATCGTCACAGATCTGATCTTCTTCTTGACTTCAAAGTTCCTGAAGACAATTCCTCAGGCTGCAGCTACAACCTGCTACGTTGCAACGCATCCAAGACTCGTAAACGTTTCCGGAAAGTACTTTGCGGACTGCAACGAGGCATGGACATCTAAATTGGGATCCAACTCACAAGAAGCTTCCCGCCTGTGGTCCGCTTCCGAAATCATGACTGCCAGAGACTCCAGAGCAATCTTCGATCCACTCGACGCCTCAGATTAA 1011 0.5193 MLDALKYLLGSFGASGYGSKSTAEEVTENCPDLGSVTAVITGATSGIGAETARVLAKRGARLVLPARSLKAAEEAKARIVAEFPNSEIVVMALDLSSLDSVRCFVSEFESLDLPLNLLINNAGKFTHEHAISEDGIEMTFATNYLGHFLLTKLLLNKMIETAKKTGVQGRIVNVSSTIHSWFSGDVIRYLGLITRNKSQYDATRAYAVSKLANVLHTKELAQRLKQMDANVTVNCVHPGIVRTRLTRETEGIVTDLIFFLTSKFLKTIPQAAATTCYVATHPRLVNVSGKYFADCNEAWTSKLGSNSQEASRLWSASEIMTARDSRAIFDPLDASD* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0236 336 Pfam short chain dehydrogenase 37 249 IPR002347 -
Vvi2g0236 336 Gene3D - 22 325 - -
Vvi2g0236 336 PANTHER RETINOL DEHYDROGENASE 15 319 - -
Vvi2g0236 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 295 IPR036291 -
Vvi2g0236 336 CDD retinol-DH_like_SDR_c_like 37 314 - -
Vvi2g0236 336 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Vvi2g0236 336 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Vvi2g0236 336 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vvi2g0236 336 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Vvi2g0236 336 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vvi2g0236 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Vvi2g0236 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Vvi2g0236 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0236 Vvi-Chr2 1944138 1946038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0236 38 252 Lipid Metabolism Gene Families AT1G24470 29.412 1.99e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0236 - - vvi:100261623 654.825