Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0302 ATGCTTGAAACAGTTAGATACCTCATCGGTTCGGTAGGCCCCAGCGGCTTCGGGTCCAAAACCACCGCCGAACAAGTCACTGGAAACTGCTCCGATCTCCGCTCCATCACCGCCATCATCACCGGTGCTACGTCGGGAATCGGAGCTGAAACGGCGCGCCTGTTGGCGAAGCGCGGGGCGAGGTTGGTGCTTCCGGCGAGGAGCATGAAAGCTGCGGAGGATGCACGCGCTCGCATCGTGTCGGAGTACCCTGAGTCAGAAATCATCGTGATGGCGCTTGATCTGAGTTCTCTGAATTCGGTTAGAAACTTCGTTGCGCGCTTCCACTCATTCGGTTTCCCTCTCAATCTCCTCATAAACAACGCTGGAAAGTTTGCACACGAGCACGCGATCACGGAGGATGGAGTTGAAATGACCTTCGCCACTAACTATCTAGGTCATTTTCTGTTAACAAAGTTGTTGCTGAACACGATGGTTGAAACGGCGAAGGAGACAGGAGTGCAAGGACGGATAGTGAATGTTTCTTCCAGCATACACGGGTGGTTCACCGGTGATATGTTCCGCTATCTGGCTCTCATAAGCCGCAAGGCAAGGCATTACGACGCCACACGTGCTTATGCTCTTTCGAAGCTCGCTAACGTGTTCCACACTAAGGTGCTTGCACGCAGACTGCAGGAAATGGAGGCCAACGTGACTGTGAATTGCGTTCATCCGGGGATCGTAAGAACCAGGCTTACCAGAGAGCGTGAAGGTTTACTTACAGATATAGTGTTCTTTTTGGCTTCAAAGCTCTTAAAGACGATTCCCCAGGCAGCTGCAACGACATGTTATGTGGCAACAAACCCAAGGCTATTGAATGTTTCTGGCAAGTACTTTGGTGACTGCAATGAAACCTCCACTTCAAAATTGGGATCCAACTCGACCGAAGCAGCAAAGTTATGGGCCGTTTCCGAACTCATCATTTCAAAGGGTCCAAAAGCTGCCTTTGACCTGCTCCAGCACCTTCACTTTTAA 1014 0.5108 MLETVRYLIGSVGPSGFGSKTTAEQVTGNCSDLRSITAIITGATSGIGAETARLLAKRGARLVLPARSMKAAEDARARIVSEYPESEIIVMALDLSSLNSVRNFVARFHSFGFPLNLLINNAGKFAHEHAITEDGVEMTFATNYLGHFLLTKLLLNTMVETAKETGVQGRIVNVSSSIHGWFTGDMFRYLALISRKARHYDATRAYALSKLANVFHTKVLARRLQEMEANVTVNCVHPGIVRTRLTREREGLLTDIVFFLASKLLKTIPQAAATTCYVATNPRLLNVSGKYFGDCNETSTSKLGSNSTEAAKLWAVSELIISKGPKAAFDLLQHLHF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0302 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Lja4g0302 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Lja4g0302 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Lja4g0302 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lja4g0302 337 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lja4g0302 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 290 IPR036291 -
Lja4g0302 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Lja4g0302 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Lja4g0302 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Lja4g0302 337 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 5 326 - -
Lja4g0302 337 CDD retinol-DH_like_SDR_c_like 37 314 - -
Lja4g0302 337 PANTHER RETINOL DEHYDROGENASE 5 326 - -
Lja4g0302 337 Pfam short chain dehydrogenase 37 177 IPR002347 -
Lja4g0302 337 Gene3D - 23 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0302 Lja-Chr4 2437389 2440317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0302 38 249 Lipid Metabolism Gene Families AT1G67730 29.091 1.75e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0302 - - gmx:100794347 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0302 4 2437389 2440317 Lja4g0302 4 2437389 2440317 ECH