Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0779 ATGGTGGACACTCTCAAGTACCTCTTGGGCTCTCCGGGACCTTCCGGGTTTGGCTCTAGCTCCACCGCCGAACAAGTCACTGGAACCACCTCCTCCTCCCATTTCTCCTCTCTCACCGCCATCATTACCGGCGCGACGTCGGGAATCGGAGCTGAGACGGCGAGGGTTCTGGCGAAGAGAGGAGTGAGGTTGATTCTGCCGGCTCGAACCGTGAAAGCTGCCGAAGAAACTAAAGCTCGCATCCTATCCGAGTCTCCGAACTCGAACATCATCGTGATGCCTCTCGATCTTAGTTCTCTCAGCTCTGTTCGCTCCTTCGTTTCTCAGTTCCATTCTCTTCATTTACCTCTCAACCTTCTTATAAACAACGCCGGAAAGTTCGCGGAACATCACGCAATCTCGGAAGATGGATTTGAGATGACGTTCGCCACGAATTATCTAGGTCATTTCCTGTTGACGGAGTTGTTGTTGAAGACGATGGTGGAAACGGCAGAGAAGACGAGGATCCAAGGACGGATCATGAACGTGTCTTCCAACGTACATGGCTGGTTTTCCGGCGACATTATCCGATATCTAGCTCTTATTACCCGCGACAACAGCCATTACGACGCCACACGTGCTTATGCTCTGTCTAAGCTCGCCAACATCTTACACACCAAGCATCTTGCTCACAAACTCCAGCAAATGGGAGCCAACGTGACTGTGAATTGCGTTCATCCTGGGATTGTGAGGACCAGGCTCACCAGGGAACGTGAAGGCTGGCTTACAGATATAGCGTTCTTACTGACTTCCAAATTCTTGAAAACCATTCCCCAGGCTGCAGCAACGACATGTTACGTGGCGACGAATCCGAGGCTGTTGAACGTGTCCGGCAAGTACTTTGCTGACTGCAACGAAGCTTCCATGTCAAAACTAGGATCCAGTTCTACGGAAGCTGCAAGGTTGTGGTCAGCTTCCGAATCCATGATCTGTGAAGGCCCCAAATCTCTTCTACAACTCCTCCACGACGATGGATGA 1017 0.5123 MVDTLKYLLGSPGPSGFGSSSTAEQVTGTTSSSHFSSLTAIITGATSGIGAETARVLAKRGVRLILPARTVKAAEETKARILSESPNSNIIVMPLDLSSLSSVRSFVSQFHSLHLPLNLLINNAGKFAEHHAISEDGFEMTFATNYLGHFLLTELLLKTMVETAEKTRIQGRIMNVSSNVHGWFSGDIIRYLALITRDNSHYDATRAYALSKLANILHTKHLAHKLQQMGANVTVNCVHPGIVRTRLTREREGWLTDIAFLLTSKFLKTIPQAAATTCYVATNPRLLNVSGKYFADCNEASMSKLGSSSTEAARLWSASESMICEGPKSLLQLLHDDG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0779 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 301 IPR036291 -
Lele49g0779 338 CDD retinol-DH_like_SDR_c_like 39 316 - -
Lele49g0779 338 Gene3D - 27 325 - -
Lele49g0779 338 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lele49g0779 338 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Lele49g0779 338 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lele49g0779 338 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Lele49g0779 338 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lele49g0779 338 PANTHER RETINOL DEHYDROGENASE 14 323 - -
Lele49g0779 338 Pfam short chain dehydrogenase 39 252 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0779 Lele-ChrLele49 4723157 4724908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0779 17 294 Acyl Lipid Metabolism Gene Families AT1G24360 26.014 1.84e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0779 49 4723157 4724908 Lele49g0779 49 4723157 4724908 ECH
Lele49g0779 49 4723157 4724908 Lele51g0803 51 4844911 4846681 hybridization
Lele49g0779 49 4723157 4724908 Lele52g0805 52 5104083 5105872 hybridization