Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00330 ATGGTTGGGAATTGGAAAAGGGTTGTGGAATTGGTGGATATGGAATTGGAAGTTGATCAGGAACAATTCTATGATACTTGTGAGGATTTGTGTTCTGTTTCTGATGAGGGTTTTGATTATTGTTTAGAATCTTGTTCTGGtggtagtagtagtaataataatgattatgtTACTAGGTTCAATTTTTggactaaaaaccttgaaagtGTTCATCATAGACGAAACAATTTTTTAAGATGGATGGATTTGGAGTATGATGAGAATTCAATTGATGGAGATGAGTTTGGAGAAGATTCGCTTCGTGGAGTTGACCGAATCACTTCAACTAGTGGGGATGGTTTGAGAACTGTAAATCAGATTGTGTTGGATTCCTTGTCAAATGAGACATCTAAGTTGTTAGAAAATTGCGGTGATGGTACCGAGAATTTGACATGTATGATAAAGAATTTGGATGATGGAACGCAGTATGTTGTAGATAAATTGGATCAAGATGGAACACTTAATACCCTGCGTGTTCTCGGATCGAACCAATTGATCAGTTTGGATGAGTTTCATAAAAATATTGGGCCGTCATCTTTTGTTCGTAGACATTTGCAGAGAGATGCTGAAAACACTAGATTGTTAAGTGTTgctaaaaagaagatgaagaaaggtTGGTTAAGCAAACTGGATTCTATTGCTTGTTTTTATCATCATAATCAAGAGTTTGATGAAACTTGCTGCAAAAAAGACTTAGATTCTAGGATACATAAAGTCCGTGTTCAGTCGCATAAGAAGCGAATTAAGGAGCTTTCCTCTCTTTATGCTGAACAAGAATTTAAAGCACACAAAGGCGTTATTTTGACAATGAAGTTCAGTCTTgatggaaaatatctggctagTGGTGGCGAAGATGGCATTGTGCGTGTGTGGAAGGTGGTTGAGGATGTAAGATCGAATGAATTGAACATTCTAGACAATGATCCATccaatatatatttcaaaatgaaCCAATTTACTGGTTGTGTGGCTCCCCTTGATGTAGATAAAGAAAAATTAGTCAAAACAGAGAAATTGAAGAGATCATCTGCTTCAACTTGTGTGGTTATCCCACCAAAGACCTTCCGCATATTGGCAAAACCTTTGCATGAATTCCAGGGGCATAAAGATGACATTTTAGACCTTGCATGGTCCAAATCAGGGTTTCTGCTGTCATCCTCTGTTGATAAGACAGTGCGCTTATGGCAAGTAGGGAGCAGCAAATGTCTTCGAGTTTTCTCTCACAATAATTATGTGACATGTGTGAATTTCAATCCTGTCAATGATAATGTTTTCATCAGTGGTTCAATTGATGGAAAGGTGCGCATATGGGAAGTTGTTCGCTGTCGGGTTGTTGATTACATTGATATCAGAGAGATAGTCACAGCTGTATGTTTCCGCCCTGATGGAAAGGGCACGATTGTGGGTACCATGGCAGGCAATTGTCGTTTTTATGATATCCTAGATAATCATATGAAAATTGATACTCAAATGTCGTTACAAGGCAAAAAGAAGACATCAGGGAAAAGGATCACTGGCTTTCAGTTTTCGCCCAGTGACCCGAGCAAATTGTTGGTCGCCTCTGCTGATTCACATGTGTGTGTACTCTCTGGAGTTGATGTCATCTACAAATTCAAGGGTAGGTTCTTCACATATGATTTCcttatttga 1689 0.3618 MVGNWKRVVELVDMELEVDQEQFYDTCEDLCSVSDEGFDYCLESCSGGSSSNNNDYVTRFNFWTKNLESVHHRRNNFLRWMDLEYDENSIDGDEFGEDSLRGVDRITSTSGDGLRTVNQIVLDSLSNETSKLLENCGDGTENLTCMIKNLDDGTQYVVDKLDQDGTLNTLRVLGSNQLISLDEFHKNIGPSSFVRRHLQRDAENTRLLSVAKKKMKKGWLSKLDSIACFYHHNQEFDETCCKKDLDSRIHKVRVQSHKKRIKELSSLYAEQEFKAHKGVILTMKFSLDGKYLASGGEDGIVRVWKVVEDVRSNELNILDNDPSNIYFKMNQFTGCVAPLDVDKEKLVKTEKLKRSSASTCVVIPPKTFRILAKPLHEFQGHKDDILDLAWSKSGFLLSSSVDKTVRLWQVGSSKCLRVFSHNNYVTCVNFNPVNDNVFISGSIDGKVRIWEVVRCRVVDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYDILDNHMKIDTQMSLQGKKKTSGKRITGFQFSPSDPSKLLVASADSHVCVLSGVDVIYKFKGRFFTYDFLI 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00330 562 Gene3D - 337 547 IPR015943 GO:0005515
Tsu02g00330 562 PANTHER WD REPEAT DOMAIN 44 16 553 IPR040324 -
Tsu02g00330 562 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Tsu02g00330 562 PRINTS G protein beta WD-40 repeat signature 438 452 IPR020472 -
Tsu02g00330 562 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Tsu02g00330 562 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 306 IPR001680 GO:0005515
Tsu02g00330 562 Pfam WD domain, G-beta repeat 271 305 IPR001680 GO:0005515
Tsu02g00330 562 Pfam WD domain, G-beta repeat 373 408 IPR001680 GO:0005515
Tsu02g00330 562 Pfam WD domain, G-beta repeat 414 450 IPR001680 GO:0005515
Tsu02g00330 562 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 16 553 - -
Tsu02g00330 562 Gene3D - 175 326 IPR015943 GO:0005515
Tsu02g00330 562 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 410 - -
Tsu02g00330 562 SMART WD40_4 266 305 IPR001680 GO:0005515
Tsu02g00330 562 SMART WD40_4 412 451 IPR001680 GO:0005515
Tsu02g00330 562 SMART WD40_4 499 543 IPR001680 GO:0005515
Tsu02g00330 562 SMART WD40_4 371 409 IPR001680 GO:0005515
Tsu02g00330 562 SMART WD40_4 454 492 IPR001680 GO:0005515
Tsu02g00330 562 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 306 - -
Tsu02g00330 562 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 452 IPR001680 GO:0005515
Tsu02g00330 562 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 452 - -
Tsu02g00330 562 SUPERFAMILY WD40 repeat-like 216 543 IPR036322 GO:0005515
Tsu02g00330 562 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 418 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00330 Tsu-Chr2 2791536 2795649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00330 247 463 Miscellaneous Gene Families AT5G08390 22.083 2.16e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00330 - - gmx:100788374 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00330 02 2791536 2795649 Tsu02g00330 02 2791536 2795649 ECH