Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06112 ATGGAATTGGGATTGGAATTGGAAGTGGATGAGGATCAATTTTATGATACTCGTGAGGATTTGAGTTCTGTGTCTGATGATGAGGGTTTTGATTATTGTTTAGAATCTTGTTCTGGTGCTGGTGCTGGTGATTATGTTTCTAGGTTCAATTTTTCGATTAATAGTCTTGAAAGTGTTCGTGATAGACGATTCAGTTTTTTGAGATGGATAGGTTTGGAGTATGATTCGAATTCGATTGAGGGAGTTGATGATCCGTCTTGTGGAGTTGACCGAATCACTTCGACCAGTGGGGCTGTTTTGAGAACCGTAGAGGGTGTTTCTTCAATCTCGAGCCAGATTGTGTTGGATTCATTATCGAATGAGGGTTCTAGGTTGCTAGAAAATCGGGGTGATGGTAATGAGGATTTGACGTGTATGATAAAGAATTTGGATGATGGAACACGGTATGTTGTAGATGAATTGGATCAGGAGGGGAAACTTAATACCCTGCGTGTTCTGGGTTCGAACCAGTTGATTAGTTTGGAAGAGTTTCATAAAAATATTGGGCCGTCGTCATTTGTTCGTAGACATTTGCAGAGAGAGGCGGAAAGTTCTAGATTATTGAGTGTTGCTAAAAAGAAGATGAAGAGAGGTTGGTTAAGCAAACTGGATTCTATTACTTGTTTTTATCCGAATCAAGGATTTGATGAAACTTGCTGCAAAGATTTTGTTTCTCGGATACAAAGAGTTCGGGTTAATTTGCATAAGAAACGAGTTAAGGAGCTTTCATGTCTTTATACTGAACAGGAGTTCAAAGCACACAAAGGCGTTATTTTGACAATGAAGTTCAGTCTCGATGGAAGATATCTAGCTAGCGGTGGTGAAGATGGCATCGTGCGCGTGTGGAAGGTGGTTGAGGATGTAAGAACAAATGAAATGAACATTCTAGATGATGATCCATCCAGTATATATTTCAAAATGAATCAATTTACTGGTATTGTGGCTCCCCTTGACGTAGATAAAGAGAACTTAGTTAAAACAGAGAAGTTGAAAAAATCTTCTTCTTCAACCTGTGTGATTATCCCACCAAAGACGTTCCGCATATTGGCCAAACCTATGCATGAATTCCAGGGGCATAGTAATGACATTTTAGACCTTGCATGGTCCAAATCAGGGTTTCTACTCTCATCCTCTCTTGATAAGACAGCGCGCCTATGGCAAGTAGGGATTGACAAATGTCTCCGAGTTTTCTCCCACAATAATTATGTGACATGTGTGAATTTCAATCCTGTCAATGATAATTTTTTCATCAGTGGTTCAATTGATGGAAAGGTGCGTATCTGGGAAGTTGTTCGCTGTCGGGTTGTTGATTATATTGACATCAGAGAGATAGTCACAGCTGTGTGCTTCCGCCCTGATGGACAGGGCACGATTGTGGGTACCATGGCAGGCAATTGCCGTTTCTATGATATCCTAGATAGTCATATGAAAATGGATACTAAAATGTCGTTACAAGGCAAAAAGAAGACATCGGGGAAAAGGATCACTGGCTTTCAGTTTTCACCCAGTGACCCGAGCAAGTTATTGGCTGCTTCGGCGGATTCACATGTATGCATACTCTCTGGAGTTGATGTCATTTACAAATTCAAGGGCCTAAGAAGTGCAGGTCAGATGCATGCTTCCTTCACCTCTGATGGGAAACATATTGTTTCGCTTAGTGAAGGTTCAAACGTTTGTATCTGGAATCACACCGGCCAAGATAGGAATACTTCCAAAGCAAAGAAGATTATGTCTTCCGAGAGTTTTCTATCCCACAATGCAACAATCGCCATACCTTGGTGTGGAATTGAGTCAACACCATTGTCCCCATCACTCGAAGAAAACTTGATTCAGAGGTCATCATTGTCTTCTCCTGATTGTTTCTTCATGAGTCGCGGATTTCTTTCCGAGTTAGTCCCAAGGGTTTCTGCTACATGGCCAGAGGAAACACTTCTCGACTCAGGTCAAACCGTTGTTTCTCCTACAATATGTAAATCAGAGTATAAATTCTTGAGAAGTGCTTGCAAGGGAATGGCTAATTCTCACTTATGGGGCCAAGTAATCGTAACAGCAGGATCTGATGGATTCATAAAAGTGTACCAAAATTACGGCTTACCTGTTCGCGTTTGA 2148 0.4115 MELGLELEVDEDQFYDTREDLSSVSDDEGFDYCLESCSGAGAGDYVSRFNFSINSLESVRDRRFSFLRWIGLEYDSNSIEGVDDPSCGVDRITSTSGAVLRTVEGVSSISSQIVLDSLSNEGSRLLENRGDGNEDLTCMIKNLDDGTRYVVDELDQEGKLNTLRVLGSNQLISLEEFHKNIGPSSFVRRHLQREAESSRLLSVAKKKMKRGWLSKLDSITCFYPNQGFDETCCKDFVSRIQRVRVNLHKKRVKELSCLYTEQEFKAHKGVILTMKFSLDGRYLASGGEDGIVRVWKVVEDVRTNEMNILDDDPSSIYFKMNQFTGIVAPLDVDKENLVKTEKLKKSSSSTCVIIPPKTFRILAKPMHEFQGHSNDILDLAWSKSGFLLSSSLDKTARLWQVGIDKCLRVFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVRCRVVDYIDIREIVTAVCFRPDGQGTIVGTMAGNCRFYDILDSHMKMDTKMSLQGKKKTSGKRITGFQFSPSDPSKLLAASADSHVCILSGVDVIYKFKGLRSAGQMHASFTSDGKHIVSLSEGSNVCIWNHTGQDRNTSKAKKIMSSESFLSHNATIAIPWCGIESTPLSPSLEENLIQRSSLSSPDCFFMSRGFLSELVPRVSATWPEETLLDSGQTVVSPTICKSEYKFLRSACKGMANSHLWGQVIVTAGSDGFIKVYQNYGLPVRV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06112 715 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Vivi5g06112 715 Pfam WD domain, G-beta repeat 405 441 IPR001680 GO:0005515
Vivi5g06112 715 Pfam WD domain, G-beta repeat 364 399 IPR001680 GO:0005515
Vivi5g06112 715 Gene3D - 448 708 IPR015943 GO:0005515
Vivi5g06112 715 Gene3D - 168 318 IPR015943 GO:0005515
Vivi5g06112 715 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 409 IPR001680 GO:0005515
Vivi5g06112 715 PANTHER WD REPEAT DOMAIN 44 9 712 IPR040324 -
Vivi5g06112 715 SMART WD40_4 257 296 IPR001680 GO:0005515
Vivi5g06112 715 SMART WD40_4 362 400 IPR001680 GO:0005515
Vivi5g06112 715 SMART WD40_4 403 442 IPR001680 GO:0005515
Vivi5g06112 715 SMART WD40_4 535 575 IPR001680 GO:0005515
Vivi5g06112 715 SMART WD40_4 445 483 IPR001680 GO:0005515
Vivi5g06112 715 SMART WD40_4 490 534 IPR001680 GO:0005515
Vivi5g06112 715 SMART WD40_4 667 707 IPR001680 GO:0005515
Vivi5g06112 715 SUPERFAMILY WD40 repeat-like 260 706 IPR036322 GO:0005515
Vivi5g06112 715 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Vivi5g06112 715 PRINTS G protein beta WD-40 repeat signature 387 401 IPR020472 -
Vivi5g06112 715 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Vivi5g06112 715 PRINTS G protein beta WD-40 repeat signature 429 443 IPR020472 -
Vivi5g06112 715 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 443 - -
Vivi5g06112 715 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 443 IPR001680 GO:0005515
Vivi5g06112 715 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 297 IPR001680 GO:0005515
Vivi5g06112 715 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 401 - -
Vivi5g06112 715 Gene3D - 320 445 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06112 Vivi-Chr5 166257734 166261873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06112 371 580 Miscellaneous Gene Families AT5G08390 26.364 3.10e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06112 - - gmx:100788374 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06112 5 166257734 166261873 Vivi5g06112 5 166257734 166261873 ECH