Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06109 ATGCTCGAAACGATTAAATACCTGATCGGTTGGCCCGGTCCAAGCGGATTCGGATCCAAATCTACCGCCGAGCAAGTCACCGAAATCCGCGGCGAGCTTCGTTCCATAACCGCCATCATCACCGGTGGAACATCTGGAATCGGAGCGGAAACAGCGCGTGTGTTGGCTTCGCGTGGTGCGAGAGTGATTCTACCGGCGCGTAGCATGAAAAACGCGGAGGAAACGAGAGATAAAATCGTAACGGAATGTCCTGAAGCGGAGATTATCGTCATGAAACTCGATCTCAGTTCTCTCAATTCCGTTACCAATTTTGTTGATCGCTTTCACTCTCTCGGTTTCCCTCTCCATATCCTCATAAACAATGCTGGAAAGTTTGCAGAAGAGCACACGATTTCAGAAGATGGACTTGAAATGACGTTCGCCACTAATTATTTAGGTCATTTTCTGTTAACGAAGTTGTTGATGAAGACGATGGTTGAAACGGCAGAGAAGACTGGGATACAAGGGAGGATAGTGAACGTAACTTCCGCCATACACAAATGGTTTACTGATGACGTCATCTCCTATTTGGCTCTTATAAGCCACGACAAAAGCCATTTCGATGCTACACGTGCTTATACTCTTTCCAAACTCGCCAACGTTTTACACACCACAGAACTTGCTAGCAGACTCAAGCAAATGGATGCAAACGTCACTGTGAACTGCCTTCATCCGGGAGTTGTGAGAACCAGACTCACCAGAGAACGTGATGGTTTTCTTACAGATTTAGTTTTCTTTTTGGCTTCCAAGCTCTTAAAGACCCTTCCTCAGGCAGCTGCAACAACATGTTATGTGGCAACTCATCCAAGGCTCTTCAATGTGTCCGGAAAGTACTTTATGGACTGCAACGAAGCCTCCAGTTCCAAATTGGGATCCAACTCAATTGAAGCTTCAAGGTTATGGGACTTTTCCGAACTCATCATTTCTAAGGGTTCAAAAGCTGCCTTTGACCAATTTCATCATAATCACCTTGAATTTTGA 1020 0.4549 MLETIKYLIGWPGPSGFGSKSTAEQVTEIRGELRSITAIITGGTSGIGAETARVLASRGARVILPARSMKNAEETRDKIVTECPEAEIIVMKLDLSSLNSVTNFVDRFHSLGFPLHILINNAGKFAEEHTISEDGLEMTFATNYLGHFLLTKLLMKTMVETAEKTGIQGRIVNVTSAIHKWFTDDVISYLALISHDKSHFDATRAYTLSKLANVLHTTELASRLKQMDANVTVNCLHPGVVRTRLTRERDGFLTDLVFFLASKLLKTLPQAAATTCYVATHPRLFNVSGKYFMDCNEASSSKLGSNSIEASRLWDFSELIISKGSKAAFDQFHHNHLEF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06109 339 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vivi5g06109 339 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Vivi5g06109 339 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vivi5g06109 339 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Vivi5g06109 339 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Vivi5g06109 339 PANTHER RETINOL DEHYDROGENASE 14 319 - -
Vivi5g06109 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 298 IPR036291 -
Vivi5g06109 339 Gene3D - 27 324 - -
Vivi5g06109 339 CDD retinol-DH_like_SDR_c_like 37 314 - -
Vivi5g06109 339 Pfam short chain dehydrogenase 37 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06109 Vivi-Chr5 166230608 166234403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06109 29 158 Acyl Lipid Metabolism Gene Families AT3G06060 31.061 3.53e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06109 - - gmx:102670316 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06109 5 166230608 166234403 Vivi5g06109 5 166230608 166234403 ECH