Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02983 ATGGAAGGGGATGAAGACCAATTCTATGATACCCGTGAGGATTTATGTTCTGGTTCTGATGGTTGTTCTAGTTTATCAGAATCAGATGAATCTAGTTCTTGGGATGGACATTTTACTAGGTTCCCGGATTGGACAAACAACCACCACCTTGAAAGTGTTCACCAGAGACGGCTCAATTTCCTAAGATGGGTGGGTTTAGAATCTGATTGTGATGTGAATTCAGTCATGGGAAAGGACGACTTGGCTGATCCATCCTCTCGTGGAGTTGACCGAGTCACGGCCACCAGTGGGGCTGTGCTAAGAACTTCTGGTTTTGCAGAGAGTGCTCTTGCCTCTACCTCAAACCAGATTGTATTGGATTCTTTGTCCAGTGCGAATTTGAGCTCACTAGAAAATTCCGGGGGTGATGAGAATTTGGCATGTATGATAAAGAATTTGGATGATGGGACACAGTACATTATGGATAAATTGGATCAAGATGGAACACCTAATACACTGCGTGTTGTCGGGTCTAACCAATTGATTAGCTTGGAAGAGTTTCACAGAAATATTGGGCAGTCACCTTTGGTTCGGAGATATTTGCAGAGGGAGGCTGAGAACTCAAGATTTTTGGCTGCTAGAAAAAAGAGAGCGAAGAGGGGTTGGCTAAGGAAGTTGGGTGTTGTGGCTTGTGTTGTTCATGATCACGGGCTTCATGAAATGAAGAACAAAGACTTTGATTCCTCAGATGTAACTGGGATCCAAAGAGTTCGAGTTCATACACACGGGAAGCGATTTAAGGAGCTCTCCTCTGTTTACACTGAGCAGGAGTTTAAAGCACATAAGGGTATTATTTTGACAATGAAGTTCAGCCTTGATGGAAAATATTTGGCTAGCGGTGGTGAAGATGGCGTTGTACGTGTGTGGAAGGTGGTTGAGGATGAAAGATCGAGTGAACTGCACATTTTGGACAATGATCCCTCAAGTATATACTTCAAAATGAACACTTATTCATTTGTAACTCCCCTTGATGTAGATAAAGAAAAATTAGTTACAACAGAGAAGTTGAGGAGATCATCTGATTCAACCTGTGTGATTATCCCACCAAAGACCTTCCGAATATCAGGGAAACCTCTGCACGAGTTCCATGGCCACAGTGGTGACATTTTAGACCTTGCATGGTCGAAGAGAGGGTTGCTACTGTCATCCTCTGTTGATAAGACAGTCCGCCTATGGCAAGTTGGAACAGACAGCTGCCTCGGTGTTTTTTCCCACAATAATTATGTTACATGTGTGCATTTCAATCCCATAAATGACAACATCTTCATCAGTGGTTCGATTGATGGTAAAGTGCGTATCTGGGAAGTTCTTCGTTGCCGGGTTATTGATTACATTGATATCAGAGAGATAGTCACTGCTGTGTGCTTCCGCCCTGATGGAAAGGGCACAATTATGGGTACTATGGCAGGCAATTGCCGTTTCTATGATATAATAGATGATCATATGCAATTGAATGCTCAATTAAACTTATGGGGCAAAAAGAAGACAGCAGGAAAGAGGATTACTGGCTTTCAGTTTTCGCCAATCGACACAAGCCAATTGTTGGTTGCTTCTGCTGATTCACACGTCTGTATACTTTCCGGAGTTGATGTCATCTACAAATTTAAGGGCCTAAAAAGTGCTGGTCAGATGCATGCTTCCTTCACATTGGACGGGAAACACATTGTTTCAGTAAGTGAGGATTCAAATGTGTGTGTCTGGAATTACAATGGCCATGACAGGAATACTTCCAAGGCGAAGAAGGTTTGGTCTTCCGAGTGTTTTCTGTCCCACAACGCAGCAATTGCCATACCTTGGTGCGGCATGGAACAAATGCCAGGAACACTCTTGTCCCCGTCATTGAGGGACGATTTCAATCACAAGTCATTCCTCTCTTCCCCGGATTGCTTCTTCTTGGGCCGTGGATTTTTGTCAGAGTTAGTCCCAAAGGTTTCTCCAACTTGGCCCGAGGAGGCACTCGCGGATCCGTGCCAAACCATAGTGTCGCCTAAGATGTACAAATCCGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCGAATTCTCACATGTGGGGCCAAGTAATTGTAACAGCAGGATGGGATGGACACATAAGGGTGTACCAGAACTATGGCCTACCAATTCGTGTTTGA 2175 0.4405 MEGDEDQFYDTREDLCSGSDGCSSLSESDESSSWDGHFTRFPDWTNNHHLESVHQRRLNFLRWVGLESDCDVNSVMGKDDLADPSSRGVDRVTATSGAVLRTSGFAESALASTSNQIVLDSLSSANLSSLENSGGDENLACMIKNLDDGTQYIMDKLDQDGTPNTLRVVGSNQLISLEEFHRNIGQSPLVRRYLQREAENSRFLAARKKRAKRGWLRKLGVVACVVHDHGLHEMKNKDFDSSDVTGIQRVRVHTHGKRFKELSSVYTEQEFKAHKGIILTMKFSLDGKYLASGGEDGVVRVWKVVEDERSSELHILDNDPSSIYFKMNTYSFVTPLDVDKEKLVTTEKLRRSSDSTCVIIPPKTFRISGKPLHEFHGHSGDILDLAWSKRGLLLSSSVDKTVRLWQVGTDSCLGVFSHNNYVTCVHFNPINDNIFISGSIDGKVRIWEVLRCRVIDYIDIREIVTAVCFRPDGKGTIMGTMAGNCRFYDIIDDHMQLNAQLNLWGKKKTAGKRITGFQFSPIDTSQLLVASADSHVCILSGVDVIYKFKGLKSAGQMHASFTLDGKHIVSVSEDSNVCVWNYNGHDRNTSKAKKVWSSECFLSHNAAIAIPWCGMEQMPGTLLSPSLRDDFNHKSFLSSPDCFFLGRGFLSELVPKVSPTWPEEALADPCQTIVSPKMYKSEYKFLRSACKGMSNSHMWGQVIVTAGWDGHIRVYQNYGLPIRV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02983 724 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Aip03g02983 724 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Aip03g02983 724 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Aip03g02983 724 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Aip03g02983 724 Gene3D - 263 499 IPR015943 GO:0005515
Aip03g02983 724 SMART WD40_4 450 489 IPR001680 GO:0005515
Aip03g02983 724 SMART WD40_4 541 581 IPR001680 GO:0005515
Aip03g02983 724 SMART WD40_4 264 303 IPR001680 GO:0005515
Aip03g02983 724 SMART WD40_4 368 406 IPR001680 GO:0005515
Aip03g02983 724 SMART WD40_4 676 716 IPR001680 GO:0005515
Aip03g02983 724 SMART WD40_4 496 540 IPR001680 GO:0005515
Aip03g02983 724 SMART WD40_4 409 448 IPR001680 GO:0005515
Aip03g02983 724 MobiDBLite consensus disorder prediction 17 32 - -
Aip03g02983 724 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 407 - -
Aip03g02983 724 MobiDBLite consensus disorder prediction 1 33 - -
Aip03g02983 724 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Aip03g02983 724 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Aip03g02983 724 Pfam WD domain, G-beta repeat 369 405 IPR001680 GO:0005515
Aip03g02983 724 PANTHER WD REPEAT DOMAIN 44 3 724 IPR040324 -
Aip03g02983 724 SUPERFAMILY WD40 repeat-like 266 715 IPR036322 GO:0005515
Aip03g02983 724 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
Aip03g02983 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 415 IPR001680 GO:0005515
Aip03g02983 724 Gene3D - 500 718 IPR015943 GO:0005515
Aip03g02983 724 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 3 724 - -
Aip03g02983 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 449 IPR001680 GO:0005515
Aip03g02983 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02983 Aip-Chr3 86529395 86533157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02983 265 479 Miscellaneous Gene Families AT5G08390 24.066 5.93e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02983 - - ahf:112790741 1397.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02983 03 86529395 86533157 Aip03g02983 03 86529395 86533157 ECH
Aip03g02983 03 86529395 86533157 Aip07g02747 07 112527450 112532140 ECH
Aip03g02983 03 86529395 86533157 Aip06g03140 06 126969245 126974264 ECH