Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0817 ATGAATGAGAAGAAGGAAGTCATAGGTTTGAAGAGAGAAAAGAAGAGAATTCCGAGGAACACGAGAGTCGAGCTTTATTCAGACTTATTTAATGCTCACAGGTTGGTGCGTCCATCCTTATTCACCAACTTCAATTCTTCTCTTCCCCTCTCGGAATCGGAATCGGAATCGCCCATTATTGCCATGGTGGACACTCTCAAGTACCTCATCGGCTCGCCTGGACCTTCCGGCTTTGGCTCTAGCTCCACCGCCGAGCACGTCACCGGAACCGCCTCCTCCCATTTTTCCTCTCTCACCGCCATCATTACCGGCGCGACGTCTGGAATCGGAGCTGAGACGGCGAGGGTTCTGGCGAAGCGAGGAGTGAGGTTGATTCTGCCGGCTCGGACCCTGAAAGCTGCCGAAGACACTAAAGCTCGTATTCTCTCCGAGTCTCCAAACTCAGACATCACCGTGATGCCTCTCGATCTTAGTTCTCTCAGCTCTGTTCGTTCCTTCGTTTCTCGGTTCCATTCCCTCCATTTGCCTCTCAACCTTCTCATAAACAACGCCGGAAAGTTCGCTGAACATCACGCAATCTCCGAAGATGGATTTGAGATGACGTTCGCCACTAATTATCTAGGTCATTTTCTGTTGACGGAGTTGTTGTTGAAGACGATGGTGGAAACGGCAGAGAAGTCGGGGATCCAAGGACGGATCGTGACCGTGTCTTCCAACGTACATGGCTGGTTTTCCGGCGACATTATCCGATATCTAGCACTTATTACCCGCAACAACAGCCATTACGACGCCACACGTGCTTATGCTCTGTCAAAGCTCGCCAACATCTTACACACCAAGCATCTTGCTCTCAAACTCCAGGAAATGGGAGCGAACGTGACAGTGAATTGCGTCCATCCAGGGATTGTGAGGACGAGTCTCACCAGGGAACGTGAAGGCTGGCTTACAGATATAGCGTTCTTGCTGACTTCCAAATTCTTGAAAACCATTCCCCAGGCTGCAGCAACGACATGTTACGTGGCGACGCATCCGAGGCTGTTGAATGTGTCTGGCAAGTACTTTGCTGACTGCAACGAAGCTTCCATGTCAAAACTAGGATCCAGTTGTACGGAAGGTGCTAGGTTGTGGTCAGCTTCCGAATCAATGATCTCCGAAGGCCCCAAATCTCTTCTGGATCTCCTCCACAACCATGAATCAAATTAA 1203 0.5021 MNEKKEVIGLKREKKRIPRNTRVELYSDLFNAHRLVRPSLFTNFNSSLPLSESESESPIIAMVDTLKYLIGSPGPSGFGSSSTAEHVTGTASSHFSSLTAIITGATSGIGAETARVLAKRGVRLILPARTLKAAEDTKARILSESPNSDITVMPLDLSSLSSVRSFVSRFHSLHLPLNLLINNAGKFAEHHAISEDGFEMTFATNYLGHFLLTELLLKTMVETAEKSGIQGRIVTVSSNVHGWFSGDIIRYLALITRNNSHYDATRAYALSKLANILHTKHLALKLQEMGANVTVNCVHPGIVRTSLTREREGWLTDIAFLLTSKFLKTIPQAAATTCYVATHPRLLNVSGKYFADCNEASMSKLGSSCTEGARLWSASESMISEGPKSLLDLLHNHESN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0817 400 PRINTS Glucose/ribitol dehydrogenase family signature 175 186 IPR002347 -
Lele50g0817 400 PRINTS Glucose/ribitol dehydrogenase family signature 99 116 IPR002347 -
Lele50g0817 400 PRINTS Glucose/ribitol dehydrogenase family signature 291 308 IPR002347 -
Lele50g0817 400 PRINTS Glucose/ribitol dehydrogenase family signature 268 287 IPR002347 -
Lele50g0817 400 PRINTS Glucose/ribitol dehydrogenase family signature 225 241 IPR002347 -
Lele50g0817 400 PANTHER RETINOL DEHYDROGENASE 75 383 - -
Lele50g0817 400 Gene3D - 85 386 - -
Lele50g0817 400 CDD retinol-DH_like_SDR_c_like 99 376 - -
Lele50g0817 400 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 99 361 IPR036291 -
Lele50g0817 400 Pfam short chain dehydrogenase 99 312 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0817 Lele-ChrLele50 5042231 5044838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0817 80 354 Acyl Lipid Metabolism Gene Families AT1G24360 25.000 5.34e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0817 50 5042231 5044838 Lele50g0817 50 5042231 5044838 ECH
Lele50g0817 50 5042231 5044838 Lele51g0803 51 4844911 4846681 hybridization
Lele50g0817 50 5042231 5044838 Lele52g0805 52 5104083 5105872 hybridization