Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2868 ATGGAAGAGGGAGAGGATCAATTCTATGATACCCGTGAGGAATTGAGTTCTGTCTCTAATGGGTGTTCATGTTGGTCAGAATCAGATGAATCTAGTTGTGGTAATGGACATTTTACTAGGTACCAGGATTGGACAAACAACAACCTTGAAAGCGTAGACATGAGACGCCTCAATTTCATAAGATGGATGCGTTTAGAGTCTGATTCTGATGTGAATTTAATGATGGGAGATGATGAGTTGGCTAATCCACCTTGTGGAGTTGACCGTGTTACGAGCACTAGTGGTGCAGTTTTGAGAACTTCGGGCGTTGTAGAGGGTCCACTTCCCTCAACCTCAGACCAGATTGTATTGGATTCTTTGTCAAATGAGGCTTCTAGGTCGGTACAAAATCGTGGCGCTACTGATAATTTGGCATGTATGATAAAGAATTTGGATGATGGAACACAGTACATTGTGGATGAATTGGGTCAAGATGGAACTCTAAGCACACTGCGTGTTCTGGGGTCTAACCAATTGATTAGCATGGAAGAGTTTCAGAGAAATATTGGGCAATCACCTTCGGTTCATAGAAATTTGCAGAGGGAGGCTGAGAACACAAGATTGCTGGGTGTCACAAAGAAGAAACCGAAGAGGGGTTGGCTAAGGAAACTTGGTTCTGTAGCTTGTGTAGTTCATGGTCACGATGAAATGAATGACAAAGACTTTGATTCAGTAGATGGAACTGGGATACAAAGAGTTCGAGTTCATTCACATGGGAAGCGATTTAAGGAGCTTTCTTACCTTAACACTGAGCAGGAGTTTAAAGCACATAAGGGTGCTATTTTGACAATGAAGTTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATTGTACGTGTGTGGAAGGTGGTCGAGGATGAAAGATCAAGCAAATTGGACATTCTGGACAATGATCCCTCAAGCATATATTTCAAAATGAACAATTTTTCATGTGTAGCTCCAGTTGATGTAGATAAAGAAAAATTGGTTAAAACAGAGAAGTTGAGGAAATCATCTGATTCAATCTGTGTGGTTATCCCACCAAAGACCTTCCGCATATTGGGGAAACCATTGCGTGAGTTCCACGGGCACAGTGGTGACATTTTAGACCTTGCATGGTCCAATAGAGGGTTGCTACTGTCATCCTCCACTGATAAGACAGCGCGCCTATGGCAGGTTGGAACAGATAGATGCCTATGTGTTTTTTCCCACAATAATTATGTGACATGTGTCCATTTCAATCCCATAGATGATAATATTTTCATTAGTGGTTCAATTGATGGAAAAGTGCGCATATGGGAAGTTCTTCATTGTCGGGTTATTGATTACATTGATATCAGAGAGATAGTCACTGCTGTGTGCTTCCGCCCTGATGGAAAGGGCACAATTGTGGGTACCATGGCAGGCAATTGCCGTTTCTATGAGATAATAGATAATCATATGCAAATGGATGCTCGATTAAGCTTACGAGACAAAAAGAAGACAGCGGGAAAAAGGATCACTGGCTTTCAGTTTTCACCAATTGACACAAGCCAATTGTTGGTTGCTTCTGCCGATTCACATATATGTATACTTTCTGGAGTGGATGTCATTTACAAATTCAAGGGCCTAAGAAGTGCAGGTCAGATGCATGCCTCCTTCACACCTGATGGGAAACACATTGTCTCAGTTAGTGAGGATTCAAATGTGTGTGTCTGGAATTACACTGGCCAGGACAGGAACACTTCCAAAGCAAAGAAGATTTGGTCTTCTGAGTGTTTCCCATCCCACAATGCAGCAATTGCCATACCTTGGTGCGGCATGCCAGGAACACTCTTGTCCCCATCACTGAGGGATGATTTCAACCACAGGTTCTCCCTGTCTTCGCCAGATTGTTCCATCTTGAGCCGCGGGTTTCTGCCAGAGTTGGTTCCCAAGATCTCTCCGTGGCCTGAGGAGACACTCGTGGACTCAAGTCAAACCGTTGTGTCTCCTAGAATGTGCAAATCGGAGTTCAAGTTCTTGAAAAGTGCTTGCAAGGGAATGTCTAATTCTCACATGTGGGGCCAAGTAATTGTAACAGCAGGATGGGATGGACACATAAGAGTGTACCAGAATTATGGACTACCCGTTCGTGTTTGA 2151 0.4333 MEEGEDQFYDTREELSSVSNGCSCWSESDESSCGNGHFTRYQDWTNNNLESVDMRRLNFIRWMRLESDSDVNLMMGDDELANPPCGVDRVTSTSGAVLRTSGVVEGPLPSTSDQIVLDSLSNEASRSVQNRGATDNLACMIKNLDDGTQYIVDELGQDGTLSTLRVLGSNQLISMEEFQRNIGQSPSVHRNLQREAENTRLLGVTKKKPKRGWLRKLGSVACVVHGHDEMNDKDFDSVDGTGIQRVRVHSHGKRFKELSYLNTEQEFKAHKGAILTMKFSLDGKYLASGGEDGIVRVWKVVEDERSSKLDILDNDPSSIYFKMNNFSCVAPVDVDKEKLVKTEKLRKSSDSICVVIPPKTFRILGKPLREFHGHSGDILDLAWSNRGLLLSSSTDKTARLWQVGTDRCLCVFSHNNYVTCVHFNPIDDNIFISGSIDGKVRIWEVLHCRVIDYIDIREIVTAVCFRPDGKGTIVGTMAGNCRFYEIIDNHMQMDARLSLRDKKKTAGKRITGFQFSPIDTSQLLVASADSHICILSGVDVIYKFKGLRSAGQMHASFTPDGKHIVSVSEDSNVCVWNYTGQDRNTSKAKKIWSSECFPSHNAAIAIPWCGMPGTLLSPSLRDDFNHRFSLSSPDCSILSRGFLPELVPKISPWPEETLVDSSQTVVSPRMCKSEFKFLKSACKGMSNSHMWGQVIVTAGWDGHIRVYQNYGLPVRV* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2868 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 403 - -
Dod04g2868 716 SUPERFAMILY WD40 repeat-like 264 707 IPR036322 GO:0005515
Dod04g2868 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 411 IPR001680 GO:0005515
Dod04g2868 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Dod04g2868 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 556 586 IPR001680 GO:0005515
Dod04g2868 716 Gene3D - 504 710 IPR015943 GO:0005515
Dod04g2868 716 PANTHER WD REPEAT DOMAIN 44 2 716 IPR040324 -
Dod04g2868 716 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Dod04g2868 716 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Dod04g2868 716 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Dod04g2868 716 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 2 716 - -
Dod04g2868 716 Gene3D - 256 503 IPR015943 GO:0005515
Dod04g2868 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 445 - -
Dod04g2868 716 Pfam WD domain, G-beta repeat 407 443 IPR001680 GO:0005515
Dod04g2868 716 Pfam WD domain, G-beta repeat 365 401 IPR001680 GO:0005515
Dod04g2868 716 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Dod04g2868 716 SMART WD40_4 537 577 IPR001680 GO:0005515
Dod04g2868 716 SMART WD40_4 668 708 IPR001680 GO:0005515
Dod04g2868 716 SMART WD40_4 446 485 IPR001680 GO:0005515
Dod04g2868 716 SMART WD40_4 364 402 IPR001680 GO:0005515
Dod04g2868 716 SMART WD40_4 492 536 IPR001680 GO:0005515
Dod04g2868 716 SMART WD40_4 405 444 IPR001680 GO:0005515
Dod04g2868 716 SMART WD40_4 260 299 IPR001680 GO:0005515
Dod04g2868 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 445 IPR001680 GO:0005515
Dod04g2868 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2868 Dod-Chr4 52547645 52551990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2868 364 565 Miscellaneous Gene Families AT5G08390 24.402 1.06e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2868 - - ahf:112790741 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2868 04 52547645 52551990 Dod04g2868 04 52547645 52551990 ECH