Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04568 ATGATCGACACTCTTAGATACCTTCTCGGCTCCGCCGGTCCAAGCGGCTTCGGCTCCAAATCCACCGCCGAACAAGTCACGGAAAACCGCGCCGATCTCCGCTGCCTCACCGCTATCATCACCGGTGCTACGTCTGGAATCGGAGCTGAAACGGCGCGTGTGTTAGCGAAACGTGGAGTTAGGCTGATTCTGCCGGCGCGTAGCGTGAAAGCTGCTGAAGACGCAAAAGCGCGTATAGTATCAGAGTGTCCTGATTCGGAGATCATTGTTATGGCTCTTGATCTAAGTTCTCTCAATTCGGTTAGAAGCTTCGTAAATCAGTTTCACACTCTCGGTTTGCCTCTCCATCTTCTCATAAACAACGCCGGAAAGTTTGCGCATGAACACGCTGTATCGGAAGACGGAGTTGAAATGACCTTCGCCACTAATTATCTAGGTCATTTTTTGTTGACAAAGTTGTTGGTGAAGACGATGGCTGAAACGGCGAAGGAGACGGGAGTTCAGGGTCGGATAGTGAACGTGTCGTCCAGCATCCACGGGTGGTTTTCCGGCGATGCGGTCTCGTATCTGGCTCTTATAAGCCGTAACAAAAGCCATTACGACGCCACACGTGCTTATGCTCTCTCCAAGCTCGCCAACGTTTTCCACACTAAGGAGCTTGCACGTAGACTCCAGCAAACGGGGGCCAACGTGACTGTTAACTGTGTTCATCCTGGGATTGTGAGAACCAGACTCACTAGGGAGCGTGAGGGTTTACTCACAGATTTAGTGTTCTTTTTGGCTTCCAAGCTCCTAAAGAGCATTCCTCAGGCAGCTGCCACAACATGTTATGTGGCAACTCATCCGAGGCTGTCCGATGTCTCCGGCAATTACTTTGCTGACTGTAACGAAACCTCAACCTCAAAATTGGGATCCAACCTAGCGGAAGCCAGAAGGTTATGGGCCACTTCTGAATTCATGATTTCTAGGGGTCCAAAGGCTGCCTTTGACCTACTCAAGCACCTTGAATTTTGA 1014 0.5039 MIDTLRYLLGSAGPSGFGSKSTAEQVTENRADLRCLTAIITGATSGIGAETARVLAKRGVRLILPARSVKAAEDAKARIVSECPDSEIIVMALDLSSLNSVRSFVNQFHTLGLPLHLLINNAGKFAHEHAVSEDGVEMTFATNYLGHFLLTKLLVKTMAETAKETGVQGRIVNVSSSIHGWFSGDAVSYLALISRNKSHYDATRAYALSKLANVFHTKELARRLQQTGANVTVNCVHPGIVRTRLTREREGLLTDLVFFLASKLLKSIPQAAATTCYVATHPRLSDVSGNYFADCNETSTSKLGSNLAEARRLWATSEFMISRGPKAAFDLLKHLEF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04568 337 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vimu11g04568 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Vimu11g04568 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Vimu11g04568 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Vimu11g04568 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vimu11g04568 337 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Vimu11g04568 337 CDD retinol-DH_like_SDR_c_like 37 314 - -
Vimu11g04568 337 Pfam short chain dehydrogenase 199 249 IPR002347 -
Vimu11g04568 337 Pfam short chain dehydrogenase 37 178 IPR002347 -
Vimu11g04568 337 Gene3D - 23 323 - -
Vimu11g04568 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Vimu11g04568 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Vimu11g04568 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Vimu11g04568 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 299 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04568 Vimu-Chr11 66380361 66382489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04568 28 298 Acyl Lipid Metabolism Gene Families AT1G63380 27.241 1.47e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04568 - - gmx:102670316 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04568 11 66380361 66382489 Vimu11g04568 11 66380361 66382489 ECH