Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0241 ATGGGGAGTAGCAGTGAGGAAGAAGGAGATCGATTTTTTGATACGCGGGAGGAGTTTTCTGATTCGGCATCAGATGGCTCCGTGGATTTTAGGTCTAGTAATGGCGTTGTCGATGGCGATTCAGATAGTTTTGGGTATGGTTTGTGGATTAAGAACCCACAGAGTGTTAATGAGCGTCGTGATAAGTTCCTCAAATGGATGAATTTAGACATGGATCAAAATCGGATTACAAGCGAAGAGTCAGAGTCAGAGTCAGGAGATGTATGTTGTGACAAGATCAAAATTGAGACTGATAGAGCTACAGAAAACAGTGGGGCTGTGCTGCGGAATTCTGTTTCGGAAGACAGGGTTTCATCAATTCAATGCTCAATGAGTTTCCGGTCTAATGGTGAGGAATTGTTGGAAGGTGGTATTAGGAAGGATAATTTACCGTGTAAAATCAAGAATTTGGATGATGGAACTGAATTTGTGGTGGATAAATTGGGTGGCAATGGAATGCATGGGAAACCAAGGGAAGTAGGTTCCAACCGAGTGGTTTCTATGGAAGAATTTCAAAGAACAATTGGGTTGTCTCCTTTGGTTCAGCAACACTTGCAGAGAGAAGTGGAGGAGGTTAGCAATTCAGTGGATATGAAAAAGAAAGTGAAGAGAGGTTGGTTAAGGAGATTAGGTGCTGTGGCATGTGTTCGGGATAGGCAAGGGGAAGCTGGTTCCACTCATGCAACAGTGGGGGCAAAAACTCGGAGAGTTCGTGTTCATCCGTATAGGAAGCGGTCTAAGGAATTATCTTCTCTTTATAAAGGTCGAGAATTTGCTGCACACAGAGGCCCAATTTTGACAATGAAATTCAGCCTTGATGGGCATTACCTGGCTAGTGGTGGGGAAGATGGCATTGTGCGGGTGTGGAAGATAATTGAGGATGGGAGTTCGAAGGAAGTTGACATTCAAGACATTGATCCTTCATCTGTGTACTTCACTAGGAATGATTCAGAATTAACTCCTCTTGATGTGGATAAGGAGAAAAGGGGTAAGAAGAAGAGACTGAAGAGGTCATCAGATTCTACTTGCGTCATTATCCCACCAAAGGTCTTTCGAATATTGGAGGAACCACTGCATGAGTTCCAGGGACACAGTGGTGATATCTTGGATCTCTCATGGTCTAAGAAAGGGTATCTGCTGTCATCCTCTACTGATAAAACCGTTCGCCTGTGGCAAGTGGGTCAGGAGCAATGCCTCAGAGTTTTCTACCATAATGATTATGTGACTTGTGTAGATTTCAATCCTGTGGATGATAATTACTTCATCAGTGGTTCAATAGATGGAAAAGTTCGCATCTGGGAAGTTCATCGCCATAAAGTTGTTGATTGGACTGATATTAGAGATATAGTCACTGCTGTTTGTTATCGCCCTGATGGGAAGGGAGGAATTGTAGGCTCCATGGTTGGCAACTGCTGTTTTTATGATATCATAGATAACCACTTGCAAGTGGATGCCCAAATATACTTACAGGGCAAAAAGAAGTTACCGGGCAAAAGGATAACTGGATTTCAGTTTTCCCCGAGCGACCCAACCAAAGTAATGGTCGCTTCTGCTGATTCATTAGTCAGAATACTTTGTGGTGCTGATGTTATCTGCAAATTCAGGGGTGTTCGTAATGTAGGAAGTCACACATCCACATCCTTCACTGCAGACGGGAAACATATTGTTTCAGCAAGTGAGGATTCTAATGTCCACCTCTGGGACTACAATAACCAGGACAGGGCTTCTTCCCGAGCAAAGGATATTTGGTCTTGTGAGAGTTTCTTGTCCCACAATGCAACGATCGCTATACCCTGGTGTGGCATGAAAACCACCACAGAAACATGTCCGTCCCCAACATTGACCACAAGTCTTCCTGGATTTGAAAATGGGCAGGAAATGGCATCTTCCCCTGATTGTTTCTCTGCTGCCCGTGAGTTTTTGTTAGAGTCTTTGCCAAGGGGTTCTGCAACTTGGCCAGAGGAGAAACTTCCAGACTCAAGTCCATTTTCACCTTCAATGCGTAGATCAGAGTACAAGTTTTTGAAGAGCGCTTGTCAAAACACAGCCAGCTCCCCTCACACATGGGGTCTTGTGATCGTCACTGCAGGCTGGGATGGATGGATCAGAACATACCACAATTATGGGTTACCTCACCGTCTTTGA 2184 0.4428 MGSSSEEEGDRFFDTREEFSDSASDGSVDFRSSNGVVDGDSDSFGYGLWIKNPQSVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSEDRVSSIQCSMSFRSNGEELLEGGIRKDNLPCKIKNLDDGTEFVVDKLGGNGMHGKPREVGSNRVVSMEEFQRTIGLSPLVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVRDRQGEAGSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLDGHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRNDSELTPLDVDKEKRGKKKRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQVGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTAVCYRPDGKGGIVGSMVGNCCFYDIIDNHLQVDAQIYLQGKKKLPGKRITGFQFSPSDPTKVMVASADSLVRILCGADVICKFRGVRNVGSHTSTSFTADGKHIVSASEDSNVHLWDYNNQDRASSRAKDIWSCESFLSHNATIAIPWCGMKTTTETCPSPTLTTSLPGFENGQEMASSPDCFSAAREFLLESLPRGSATWPEEKLPDSSPFSPSMRRSEYKFLKSACQNTASSPHTWGLVIVTAGWDGWIRTYHNYGLPHRL* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0241 727 Gene3D - 237 503 IPR015943 GO:0005515
Vvi2g0241 727 FunFam WD repeat-containing protein 44 isoform A 258 501 - -
Vvi2g0241 727 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Vvi2g0241 727 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Vvi2g0241 727 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Vvi2g0241 727 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 414 IPR001680 GO:0005515
Vvi2g0241 727 MobiDBLite consensus disorder prediction 1 34 - -
Vvi2g0241 727 MobiDBLite consensus disorder prediction 7 24 - -
Vvi2g0241 727 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Vvi2g0241 727 Pfam WD domain, G-beta repeat 409 446 IPR001680 GO:0005515
Vvi2g0241 727 Pfam WD domain, G-beta repeat 369 404 IPR001680 GO:0005515
Vvi2g0241 727 Pfam WD domain, G-beta repeat 557 581 IPR001680 GO:0005515
Vvi2g0241 727 Gene3D - 504 722 IPR015943 GO:0005515
Vvi2g0241 727 PANTHER WD REPEAT DOMAIN 44 4 724 IPR040324 -
Vvi2g0241 727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Vvi2g0241 727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 374 406 - -
Vvi2g0241 727 SUPERFAMILY WD40 repeat-like 267 718 IPR036322 GO:0005515
Vvi2g0241 727 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 448 IPR001680 GO:0005515
Vvi2g0241 727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 448 - -
Vvi2g0241 727 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 590 IPR001680 GO:0005515
Vvi2g0241 727 SMART WD40_4 264 303 IPR001680 GO:0005515
Vvi2g0241 727 SMART WD40_4 367 405 IPR001680 GO:0005515
Vvi2g0241 727 SMART WD40_4 540 581 IPR001680 GO:0005515
Vvi2g0241 727 SMART WD40_4 408 447 IPR001680 GO:0005515
Vvi2g0241 727 SMART WD40_4 495 539 IPR001680 GO:0005515
Vvi2g0241 727 SMART WD40_4 449 488 IPR001680 GO:0005515
Vvi2g0241 727 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 304 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0241 Vvi-Chr2 1999314 2003316 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0241 - - vvi:100249640 1465.29