Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0422 Acco11g1660 . Accr9g00776 . Adu03g02835 . Aed11g1701 . Aev05g0960 Aev03g3044 Ahy15g1021 Ahy13g2884 Aip05g01050 Aip03g03253 Alju09g1658 . . Amo13g3540 . Apr2g1172 Arst3g03752 . Bach4g00164 . Bisa11g0990 . Bva08g00192 Bva11g02096 . Car06g00550 Cca06g01783 . . . Dod02g1077 Dod04g2689 Enph13g1366 . Glsi05g2056 . . . Gma05g02010 Gma08g00113 . . . . . . . Lal15g1377 . Lal23g1519 . . . . . . Lapu3g03560 . Lasa7g04691 . Lele49g0622 Lele50g0650 Lele51g0640 Lele52g0642 . . . . Lja4g0449 . . Mal7g4893 Mepo2g04583 . . . Mibi12g1421 . . Mtr8g3425 . . Phco4g03258 . Prci10g0992 . . Psa7g0821 Pste3g01124 . . Pte12g00089 . . Pumo6g00525 . Pvu2g2955 . Rops2g00590 . Seca12g06447 . Spst3g01129 . Ssu2g2843 . . . . Tpr3g0674 Trre7g05394 . . Tsu02g00493 Vian1g03801 . Vifa6g03474 . Vimu11g04367 . Viun3g00615 . Vivi5g05820 . Vra11g0297 .
Vvi2g0423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0424 . . . . . . . . . . . . . . . . . . . . . . . Bach10g00161 . . . . . . . . . . . . . . . . . . . . . . . . . Lal16g0370 . . . . . . . . . . . . . Lasa4g02964 . . . . . . . . . . . . . Mepo1g01515 . . . . . . . Phac3g03266 . Phco8g00663 . . . . . Pste6g01747 . . . . . Pumo4g01564 . Pvu3g2186 . Rops2g04164 . Seca12g01759 . Spst3g04415 . . . . . . . Trre15g03084 . . . Vian1g01313 . Vifa4g03063 . Vimu7g00502 . Viun3g04271 . Vivi1g02317 . .
Vvi2g0425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cca11g01717 . . . . . . . . . . . . . . . . . . Lal23g0262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0427 . . . . . . . . . . Ahy15g0894 . Aip05g00921 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0428 . . . . . . . . Aev05g0951 . Ahy15g0895 . Aip05g00922 . . . . . . . . . . . . . . . . . . . . . Dod02g1066 . . . . . . . . . . . . . Lal15g0072 . . . . . Lan18g1100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0431 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cca11g01716 . . . . . . . . . . . . . . . . . . Lal23g0268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 206 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0422 Chr2 3529935 3538331 -
Acco Acco11g1660 Chr11 31011345 31016461 +
Accr Accr9g00776 Chr9 9136513 9142252 -
Adu Adu03g02835 Chr03 107014947 107020957 +
Aed Aed11g1701 Chr11 20683297 20686655 -
Aev Aev05g0960 Chr05 6767477 6772579 -
Aev Aev03g3044 Chr03 29339720 29345356 -
Ahy Ahy15g1021 Chr15 15626154 15633424 -
Ahy Ahy13g2884 Chr13 115467529 115473356 +
Aip Aip05g01050 Chr05 15084501 15091474 -
Aip Aip03g03253 Chr03 106062521 106068493 +
Alju Alju09g1658 Chr09 40424731 40429575 +
Amo Amo13g3540 Chr13 119944442 119950612 +
Apr Apr2g1172 Chr2 17970447 17977750 -
Arst Arst3g03752 Chr3 105741905 105748028 +
Bach Bach4g00164 Chr4 1096472 1102871 +
Bisa Bisa11g0990 Chr11 26616556 26622668 +
Bva Bva08g00192 Chr08 944901 950563 +
Bva Bva11g02096 Chr11 17421092 17427534 -
Car Car06g00550 Chr06 5550057 5555411 +
Cca Cca06g01783 Chr06 33141498 33151735 -
Dod Dod02g1077 Chr02 13440181 13449238 -
Dod Dod04g2689 Chr04 50859714 50865054 -
Enph Enph13g1366 Chr13 19326591 19333453 -
Glsi Glsi05g2056 Chr05 67351941 67357451 -
Gma Gma05g02010 Chr05 41437625 41443779 -
Gma Gma08g00113 Chr08 979947 985667 -
Lal Lal15g1377 Chr15 15899285 15909928 -
Lal Lal23g1519 Chr23 15357547 15365888 -
Lapu Lapu3g03560 Chr3 59032559 59039866 -
Lasa Lasa7g04691 Chr7 680340182 680347725 -
Lele Lele49g0622 Chr49 3766382 3771377 -
Lele Lele50g0650 Chr50 3983121 3988065 -
Lele Lele51g0640 Chr51 3867578 3874567 -
Lele Lele52g0642 Chr52 4067425 4072480 -
Lja Lja4g0449 Chr4 3661510 3669920 +
Mal Mal7g4893 Chr7 117596217 117607428 -
Mepo Mepo2g04583 Chr2 54249444 54258340 -
Mibi Mibi12g1421 Chr12 29824751 29829466 +
Mtr Mtr8g3425 Chr8 44814812 44824356 -
Phco Phco4g03258 Chr4 53222655 53228418 -
Prci Prci10g0992 Chr10 6770853 6777865 -
Psa Psa7g0821 Chr7 59678722 59686495 -
Pste Pste3g01124 Chr3 7192382 7194769 +
Pte Pte12g00089 Chr12 766345 773017 -
Pumo Pumo6g00525 Chr6 6527022 6537338 +
Pvu Pvu2g2955 Chr2 45073381 45080275 -
Rops Rops2g00590 Chr2 8463372 8471466 +
Seca Seca12g06447 Chr12 156552983 156559588 -
Spst Spst3g01129 Chr3 14628467 14637793 +
Ssu Ssu2g2843 Chr2 89464917 89467185 -
Tpr Tpr3g0674 Chr3 6523522 6533546 +
Trre Trre7g05394 Chr7 59993558 59998411 -
Tsu Tsu02g00493 Chr02 4102631 4109859 +
Vian Vian1g03801 Chr1 61053704 61059619 -
Vifa Vifa6g03474 Chr6 1145830057 1145838780 -
Vimu Vimu11g04367 Chr11 64973429 64979466 -
Viun Viun3g00615 Chr3 3777610 3784870 +
Vivi Vivi5g05820 Chr5 162167705 162180334 -
Vra Vra11g0297 Chr11 2106369 2116929 +
Vvi Vvi2g0423 Chr2 3548144 3553841 -
Vvi Vvi2g0424 Chr2 3558654 3563549 -
Bach Bach10g00161 Chr10 1119138 1123456 +
Lal Lal16g0370 Chr16 2226917 2230317 -
Lasa Lasa4g02964 Chr4 550994371 550998215 -
Mepo Mepo1g01515 Chr1 14929588 14933868 +
Phac Phac3g03266 Chr3 33515308 33519754 +
Phco Phco8g00663 Chr8 6639221 6643192 +
Pste Pste6g01747 Chr6 7875803 7880209 -
Pumo Pumo4g01564 Chr4 19712688 19717424 +
Pvu Pvu3g2186 Chr3 42712531 42716851 +
Rops Rops2g04164 Chr2 75838543 75843581 +
Seca Seca12g01759 Chr12 19588318 19593540 +
Spst Spst3g04415 Chr3 95683178 95687304 -
Trre Trre15g03084 Chr15 28010749 28014693 +
Vian Vian1g01313 Chr1 14171894 14175900 +
Vifa Vifa4g03063 Chr4 985030848 985034731 -
Vimu Vimu7g00502 Chr7 5283298 5287328 -
Viun Viun3g04271 Chr3 50486085 50490616 -
Vivi Vivi1g02317 Chr1 48960328 48964511 +
Vvi Vvi2g0425 Chr2 3566747 3568108 -
Vvi Vvi2g0426 Chr2 3570051 3585704 +
Cca Cca11g01717 Chr11 41637365 41643277 -
Lal Lal23g0262 Chr23 2607561 2616279 +
Vvi Vvi2g0427 Chr2 3591529 3593551 +
Ahy Ahy15g0894 Chr15 13197446 13200927 -
Aip Aip05g00921 Chr05 12802609 12806292 -
Vvi Vvi2g0428 Chr2 3594087 3614388 -
Aev Aev05g0951 Chr05 6714204 6719062 -
Ahy Ahy15g0895 Chr15 13209424 13213550 +
Aip Aip05g00922 Chr05 12814135 12818292 +
Dod Dod02g1066 Chr02 13305257 13313731 -
Lal Lal15g0072 Chr15 498060 507654 +
Lan Lan18g1100 Chr18 16067485 16074586 -
Vvi Vvi2g0429 Chr2 3615695 3627411 -
Vvi Vvi2g0430 Chr2 3631707 3638664 +
Vvi Vvi2g0431 Chr2 3644809 3648661 +
Cca Cca11g01716 Chr11 41626605 41629988 -
Lal Lal23g0268 Chr23 2660442 2666709 +
Aed Aed11g1701 Chr11 20683297 20686655 -
Cca Cca06g01783 Chr06 33141498 33151735 -
Ssu Ssu2g2843 Chr2 89464917 89467185 -
Vra Vra11g0297 Chr11 2106369 2116929 +