Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04415 ATGGCGAGGCCTAATCAAGAGGCGGTTGCGACTTTCGTCAGCATAACTGGCTTGCCGGAAGCAGTAGCGCTACAAAAACTCGAGGAGCATGGTGGTAATCTCAATGAAGCAGTCAATGCACATTTTAGTGAAGGAGATAGAAATCTAATGACTGGGTATACTCTCTTTTCCCTTAGTAGCAATTCTCACAACAGCTCTACTGCATTTCCTCAAGATGATTTCATGGACGTAGATGATCAAAATGATGCAGATATTCACAGAATTCCATCACTTCCAGCTTCAGCAGCAAATCTCAATCCATTTTCTCTTCTTGATCCAACAATTGGGAGAGGTATCTTTGGTACTCCTCTTGATTCAACATTCCAGGCACCATTTGTTACACATCCTAGAGAGGTAAGGGAGATTCCTATAGAGGTTAAGGATGGTAACCAATCCACTACTCCAGCTTCTCATGTTCCATCCATTGAAGACGTCACTGGAACTGTTGATGCCCATGGTCCAGATATCCATGGGACTGTCATAATCGATGATGAAGATGATGACACTGCTCCACCTCCCCGGATTGCACATCTAGATGAGCAAAACCATAAGATTTTGGCTGATACTTCACTCAATAGCAGACCTAGTGCTCCCGAGTCTGAGAATTTACCAGATTATAGCAATGAGATAGAAGAAGAAATGCTTCGTGCAGCAATTGAGGCTTCTAAACGGGAGGCTGAGGAAAATTACAGAAATCACAAACTTGGCAGACAAATTGACTCCAGTGAATCAGGATCACAGTCAAGGCAATCTTATTTTGAGGATCCTGAGCTTGCCCATGCAGTTTCATTGTCCCTGAAGACAGCTGAGCAAGAGAAGGCATTGCGTGTACAGGAAGGAGATTCTGAATCACCGCCAGCAGGGCCATCTAAGTCATCAGAGACTGGACTAGGGGAAGTGGCATCTAATGGAAGATTGCAGCCAGGAAGCTTGTCCTTTCATGATGAAGCTGAAGATGTAGAGGAGCAGCCACTGGTTAGGAACAGATCTAGGCATATGTCTTCTGGATCCACAGGATCAGTCAAAGAGGTTGAATTTGCTGAGGCCAGCACACTACCAACCACAGCACCACAGGAGAACAGTAATCCTCATCATAATAGAAATTCCTTCCCCTCTGATGAGTGGGGTGGCATATCTTCAGAGGAGCATGATGAAGCAGTTATGCTTGAAGCTGCAATGTTTGGTGGAATCCCTGAAGGGACCGGATATAATTATGCTTATGCACCACATGAATTTGTGCAACGGGGTTTCAATCCTCGTGCCCCATATCGCCCACCTTCACCAACACTGGCGGCACAGCGCCTGATAAGGGAACAGCAGGATGATGAATATCTTGCATCATTACAAGCAGACAGAGAAAAAGAATTGAAGGCCATAGAAGAAGCCAAGGCTGCTCGAGAAGAGGAAAGGCGGAGAGCAGAAGAATCTCGCAAGAAACTACAGGAAGAGCAGGAATTGGAAACACTGTTAGCAGCTAAAGAAGTCTCACTGCCACCAGAACCATCCTCAGATGATGATAATGCTGTTAACTTGATGGTAAAAATGCCAGATGGCAACCGTCGTGGTCGCAGATTCCTAAAATCTAATAGGCTACAGTCTCTGTTCGACTTCATAGATATTGGTAGGGTGGTGAAACCAGGCAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCTTTTAGTGATGGAGAGAGTGGTGCGACCCTAGCTGAACTTGGCCTAACTAACAAGCAAGAAGCTTTGTTTTTGGAGTTAATCTGA 1800 0.4533 MARPNQEAVATFVSITGLPEAVALQKLEEHGGNLNEAVNAHFSEGDRNLMTGYTLFSLSSNSHNSSTAFPQDDFMDVDDQNDADIHRIPSLPASAANLNPFSLLDPTIGRGIFGTPLDSTFQAPFVTHPREVREIPIEVKDGNQSTTPASHVPSIEDVTGTVDAHGPDIHGTVIIDDEDDDTAPPPRIAHLDEQNHKILADTSLNSRPSAPESENLPDYSNEIEEEMLRAAIEASKREAEENYRNHKLGRQIDSSESGSQSRQSYFEDPELAHAVSLSLKTAEQEKALRVQEGDSESPPAGPSKSSETGLGEVASNGRLQPGSLSFHDEAEDVEEQPLVRNRSRHMSSGSTGSVKEVEFAEASTLPTTAPQENSNPHHNRNSFPSDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYNYAYAPHEFVQRGFNPRAPYRPPSPTLAAQRLIREQQDDEYLASLQADREKELKAIEEAKAAREEERRRAEESRKKLQEEQELETLLAAKEVSLPPEPSSDDDNAVNLMVKMPDGNRRGRRFLKSNRLQSLFDFIDIGRVVKPGSYRLVRPYPRRAFSDGESGATLAELGLTNKQEALFLELI 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04415 599 MobiDBLite consensus disorder prediction 364 388 - -
Spst3g04415 599 SMART ubx_3 514 598 IPR001012 GO:0005515
Spst3g04415 599 MobiDBLite consensus disorder prediction 285 392 - -
Spst3g04415 599 Coils Coil 458 505 - -
Spst3g04415 599 MobiDBLite consensus disorder prediction 201 220 - -
Spst3g04415 599 Pfam UBA-like domain 6 46 - -
Spst3g04415 599 PANTHER FAS-ASSOCIATED PROTEIN 11 598 - -
Spst3g04415 599 Gene3D - 220 293 - -
Spst3g04415 599 CDD UBA_Ubx1_like 6 42 - -
Spst3g04415 599 MobiDBLite consensus disorder prediction 325 341 - -
Spst3g04415 599 MobiDBLite consensus disorder prediction 252 266 - -
Spst3g04415 599 MobiDBLite consensus disorder prediction 298 322 - -
Spst3g04415 599 Pfam UBX domain 518 597 IPR001012 GO:0005515
Spst3g04415 599 CDD UBX 523 597 - -
Spst3g04415 599 Gene3D - 518 598 - -
Spst3g04415 599 ProSiteProfiles UBX domain profile. 517 595 IPR001012 GO:0005515
Spst3g04415 599 Gene3D - 1 45 - -
Spst3g04415 599 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 224 242 IPR003903 -
Spst3g04415 599 MobiDBLite consensus disorder prediction 175 194 - -
Spst3g04415 599 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Spst3g04415 599 SUPERFAMILY Ubiquitin-like 480 595 IPR029071 -
Spst3g04415 599 SMART uim 223 242 IPR003903 -
Spst3g04415 599 SMART uim 266 285 IPR003903 -
Spst3g04415 599 MobiDBLite consensus disorder prediction 241 266 - -
Spst3g04415 599 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04415 Spst-Chr3 95683178 95687304 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04415 - - vum:124835115 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04415 3 95683178 95687304 Spst3g04415 3 95683178 95687304 ECH