Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03801 ATGGAAGATCCTGATATTGAAAAGTCTGAAGCAACCAATAAACAGATTAACAGTAGCACAAACTGTAATTCCAAACAGCAGAGTGCAGAAAATGCTAACGAACGTCCTGAATGGTTACCTGATGGCTGGAACTTGGAAGTCAGAATCCGTAAAAGTGGTGTACACATGGGATCTGGATACAAGTGTTACATCGAACCATTAAAAGGATACAAATTCTTCTCCAAACCAGAGGTATTACGGTATCTCGAAACTGTGAAGGACAGCAGTTGCACTTCCAAGAAGGGGAATAAAAGTAGTAAGATAAATACTCCAAATGACAAGAGCTGCACTTCCAAGGAGAAGAAATGCAGTAAAATGCAGACTCCAAACAACAAGAGCAGCAGTTCCAAGAAGGAGAAAAAATGTGCTAGCATGGAGTTTCCAAATGACGACAGTTGCACTCCCAAGGAGGAGAAGAAGGGCAATAACATGGATTTTCCAAACAACAACAGTTGTGCTCCCAAGAAGGAGAAGAATGGGAATAACTTGGATTCTCCCAACGACAGCAGTTGCCTGTCCAAGAAGGAGAAGATAGGCACTAACATGGATTCTCCAAAGGACAGCAGTTGCACTCCGAAGAAGGAGAAGAATTGCACTAACATGGATTCTCCAATTGATGTTGTGGTTGAGAAGTCTATTCCGGAGGATTTACCACATGGGTGGTTAAAAGAATTGAAGATTTCGAAGAATGGCAAGGGCATTAGGAAAGATCCGTTTTATATTGATCCAGTGAGTGGATATGTATTCCGCTCTAAGAAGGATGTACTGCGGTATCTTGCATCTGGTGATATACGGTCATGTGCCTTTAAGCCAAGTAGAAGACAAATCCAAGACGAAGACAACATAACTTCACCACCTGCTGCCAAGCGGCAGAAACTGAAGCAGTCTGCACCCACACAACAGCTTTCTGCAGCCACAGAAATACTTGATAAAAGCAGCTTAGAACCTAGTGCTAATAGCCCAAGGAAAAAGCAAAATGCAAATGTTTCGGCTAGAACGAAGGTTGCTTCTGTTCCTAAAGGTGATTCTGTTGCAAATATGCATTCACTAGAAGATGGAGCTGCAAACTCATCTGAAGTGAAGAAATCATCTGACCCAGGTAGGTCAGCACTTTTGAAAAATGAATCCTTGAAGGAATCAGCAAAAGCACTTTTTGCAGATGATTTGCAAGAAGAGGAACGTGCTGTGAATGCAGTGGAGAATGGTAATGAGAAAAATCACGGTAACCAAAGCATATCCAAAATCAGGAAGGAGTTCAATGTACCGCAGCGGTCATCACCGAGACTTGCTGGAAGTAAATCTGTACAGTTGGTAAACAATGTGGTCAATGCACAGACACTTCAGGTTCCAAAAAGAAACTTGAGGAAAAGTAGAAACACTCTAGATGTTGATATTTCTGTGGACCAAGCAGCTCCTAAAGAACAACCACATGAGCAAGAAAGAGATAAAATAGAAGACAAAAAGCCAGAAATCCAAATCAGCTCAAACAAATCAGGTAAAAAGAAAGAGCACCACCTTCCTCGTCGTGCTTCAAAACGATTAGCTGCTATTGAGCATGAGTCAATGAACTCTAAAGTGGAATTGCAGCAAAGTGAGTGTGGGCCAGCTACAGTGCTTGCTAATCAAGCCCCAATAAATGGAAAGTCAACAAATAAAAGGAAAAAGTCAGCAGCACCTCATCTGGAGAAAAGGGGAAAAGAAGAGATGGATGATGAGAAAACAGAACCTCAGCTGTCCTTTGCATATCACTATTCGTGGTCCGACCCAAGCTTGGAATATGCAATCAATGCCCTCACTGGTGTGTTACCACCAGCTGATAATATACCCAGTACTGTTGCCGAAACTGATATTCAAAAAGCTTCAATTGATAATGGTACGGGAAGGAGCACCACTGAAGTCCCTGAAACCGATATTCGAAAAGCTTCAGTTGACAGTGGTATGGGAAGGAGCACCACTGCAGTCCCGGATACTCATATACAAAAAGCTCCAATTGATAATGGTACGGGAAGTAGCACCACTGCAGTCCCTGATACTGATATTCAAAAAGCTCCAGTTGATAATGGTACGGGAAGTAGCACCACTGCAGTCCCTGATACTGATATTCAAAAAGCTTCGGTTGACAATGGTAGGGCAAGTAGTACCACTGCAGTCCCTGATACTGATATTCAAAAAGCTTCTGTTGACAATGGTAGGGCAAGTAGTACCACTGCAGTCCTTGATACTGATATTCAAAAAGCTTCAGTTGACAATGGTACGGCAAGTAGTACCACTGCAGTCCTTGATACTGATATTAAAAAAGCTTCAGTTGACAATGGTACGGGAAGGAGCCCCGCTGCAGTCCCTGAAACTGATATTCAAAACACTTCAGTAAACATTGGCAGAAGTGCCACTAATATTCTTGAAACTGATCTTCAAAAAACTTTGATTGACAGTGTTAAGGGGAGTAGCGCCACTACAATCCCTGAAAACAATGTTCAGAAAACGGTGGTTGAAATGGAATCGGGAAGTACCGGACCTGAAACTGATATTCAAAAGTCTTTGATTGACAGTGTTACAAGATGCAGGGATAGTGAAAACAATTTACATGACACTGTTACAGGAAGCAAGTATAGAAAATCCCAGGTGCGTTCTAATAAACCCAAGAGAACGAAAGAGCTCAAAGTACCTGTGCGGTTATCAAAGCGACTTGCTGGCCTGGAACCTGAGTTACCGCCTGCTGAAAGAGCTCTTGAATATTCCACTAGAAAATCATGTAAAGAAGAGCCAACAGCCACTGCTACTCTAACTAATGGAGTGTCTGATCATCACAACGCTGGGGAAGAAACCAAGCCTACTCTTCTTCAAGCTTCTGACAGTTTGAAAACAGAAGTGCTTGGAGAATCATTAAAACGGAGTGAGAACTCATATGATACCCAAACCGATCACAAGGAACAATTGGAGAAAGTTGAAATTGAAAATGTTGGTGATGTGAGATCAGAGCCTAAGCTCCCCTTACCGTTTGGGGACTCTTGGTCAGATCCATGCTTAGAATTTGCCATCAAGACTCTCACTGGTGTTTTTCCAGTTGATGCTGGTGGAGACATAATGCCTGCTTTGCCTCCTGGCTTTGATAATCCCCCATATAGGCAAGTGCATCGAACTGTGGTGACAGACATTAATCAAGAAGTCCATGATTACTCGAACCAACCCTCGCTCAATAAGGAGCTTAATATGGTTAGTCAACCTGAGTTGAGGACCGGCTCCATCTCTTATGAAAATGCTTCTAACTTTACAACTAGGGAATCTTATCTTGATCAAGATAACATTCTTAAGAATTTTGATGTGGAACCCAGTCTCACTGGAAACATAACACAACCTGTGCATCATTCTTGGAATATAAACACACTAACACATGAAGAGCCATTAAAGCAAAATGGACAGGCTGTTGAGGGTGGAATTATTACAACGGAGCAGCAACTAATTGAAACTGGAGCTGTAAACCATGACAATTCCGAGTTACAGTATTGTGCACCGTTTATGAATTCTTGGTCAGACCCATGCTTAGAATTTGCATTTAAGACTCTTACAGGGGCGATACCAGTAGAGGAAAATTTAACACTCCAAGGATGTTTCCCGGAAACTGCTAACTATCATGAACGGAGGGATGGTGTCTCATTGTTGCCAGATTTCAGATCATCTAGCTTTTCACAAAGCGATTTCTCGTTTTTCCATGATACAGGGGTTAAGTCCATGCCAGGGCAGCAGTCATCAGTAAGCTCTCCATTCCTACCCTTGGAGAAAACAGGTCTTCAAGGTTTTGCTGGAGTTGATCCTCAAACACACTTTTCTCAGTGCAACAATAATTTTCAAAGGTAA 3894 0.4222 MEDPDIEKSEATNKQINSSTNCNSKQQSAENANERPEWLPDGWNLEVRIRKSGVHMGSGYKCYIEPLKGYKFFSKPEVLRYLETVKDSSCTSKKGNKSSKINTPNDKSCTSKEKKCSKMQTPNNKSSSSKKEKKCASMEFPNDDSCTPKEEKKGNNMDFPNNNSCAPKKEKNGNNLDSPNDSSCLSKKEKIGTNMDSPKDSSCTPKKEKNCTNMDSPIDVVVEKSIPEDLPHGWLKELKISKNGKGIRKDPFYIDPVSGYVFRSKKDVLRYLASGDIRSCAFKPSRRQIQDEDNITSPPAAKRQKLKQSAPTQQLSAATEILDKSSLEPSANSPRKKQNANVSARTKVASVPKGDSVANMHSLEDGAANSSEVKKSSDPGRSALLKNESLKESAKALFADDLQEEERAVNAVENGNEKNHGNQSISKIRKEFNVPQRSSPRLAGSKSVQLVNNVVNAQTLQVPKRNLRKSRNTLDVDISVDQAAPKEQPHEQERDKIEDKKPEIQISSNKSGKKKEHHLPRRASKRLAAIEHESMNSKVELQQSECGPATVLANQAPINGKSTNKRKKSAAPHLEKRGKEEMDDEKTEPQLSFAYHYSWSDPSLEYAINALTGVLPPADNIPSTVAETDIQKASIDNGTGRSTTEVPETDIRKASVDSGMGRSTTAVPDTHIQKAPIDNGTGSSTTAVPDTDIQKAPVDNGTGSSTTAVPDTDIQKASVDNGRASSTTAVPDTDIQKASVDNGRASSTTAVLDTDIQKASVDNGTASSTTAVLDTDIKKASVDNGTGRSPAAVPETDIQNTSVNIGRSATNILETDLQKTLIDSVKGSSATTIPENNVQKTVVEMESGSTGPETDIQKSLIDSVTRCRDSENNLHDTVTGSKYRKSQVRSNKPKRTKELKVPVRLSKRLAGLEPELPPAERALEYSTRKSCKEEPTATATLTNGVSDHHNAGEETKPTLLQASDSLKTEVLGESLKRSENSYDTQTDHKEQLEKVEIENVGDVRSEPKLPLPFGDSWSDPCLEFAIKTLTGVFPVDAGGDIMPALPPGFDNPPYRQVHRTVVTDINQEVHDYSNQPSLNKELNMVSQPELRTGSISYENASNFTTRESYLDQDNILKNFDVEPSLTGNITQPVHHSWNINTLTHEEPLKQNGQAVEGGIITTEQQLIETGAVNHDNSELQYCAPFMNSWSDPCLEFAFKTLTGAIPVEENLTLQGCFPETANYHERRDGVSLLPDFRSSSFSQSDFSFFHDTGVKSMPGQQSSVSSPFLPLEKTGLQGFAGVDPQTHFSQCNNNFQR 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03801 1297 MobiDBLite consensus disorder prediction 157 200 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 630 645 - -
Vian1g03801 1297 Pfam Methyl-CpG binding domain 31 87 IPR001739 GO:0003677
Vian1g03801 1297 Pfam Methyl-CpG binding domain 230 275 IPR001739 GO:0003677
Vian1g03801 1297 MobiDBLite consensus disorder prediction 462 522 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 554 586 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 658 747 - -
Vian1g03801 1297 Gene3D - 5 137 - -
Vian1g03801 1297 Gene3D - 193 347 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 127 156 - -
Vian1g03801 1297 PANTHER OS04G0193200 PROTEIN 824 1288 IPR038945 -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 925 966 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 11 33 - -
Vian1g03801 1297 SUPERFAMILY DNA-binding domain 20 91 IPR016177 GO:0003677
Vian1g03801 1297 MobiDBLite consensus disorder prediction 1 41 - -
Vian1g03801 1297 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 220 287 IPR001739 GO:0003677
Vian1g03801 1297 MobiDBLite consensus disorder prediction 484 513 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 87 210 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 284 359 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 630 747 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 291 346 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 932 948 - -
Vian1g03801 1297 MobiDBLite consensus disorder prediction 87 106 - -
Vian1g03801 1297 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 29 104 IPR001739 GO:0003677
Vian1g03801 1297 SUPERFAMILY DNA-binding domain 226 279 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03801 Vian-Chr1 61053704 61059619 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03801 - - vra:106768326 2402.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03801 1 61053704 61059619 Vian1g03801 1 61053704 61059619 ECH
Vian10g00290 10 2664344 2673781 Vian1g03801 1 61053704 61059619 PCT