Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04271 ATGGCACGGCCTAATCAAGAGGCGGTTGAGACTTTCGTCAGCATCACTGGCTTGCCTGAGGCAGTAGCGTTGCAAAAACTCGAGGAGCATGGAGGTAATCTCAATGAAGCAGTCAATGCACATTTTAGTGAAGGAGACAGAAATTTAACGACTGGCTCTCACAACAGCTCTGCTGCATTTCCTCAAGATGATTTCATGGATATAGATGATCAACACGATGCGGATGTTCAGAGAATTCCATCACTTCCAGCTTTAGCAGCAAATCTCAATCCGTTTTCTCTTCTTGATCCTACAATTGGGAGAGGTATATTTGGTACTCCTCTTGATTCAACTGTCCAGGCACCCTTTGTTACACATCCTAGAGAGGTGAGGGAGATTCCTATAGAGGTTAAGGATGGTAACCAATCCTCTACTCAATCTGGTCATCCATCCATTGAAGATGTCACTGGAACAGTTGATGCCGATGGTCCGGATATCCATGGGACTGTCATAATTGACAATGACGATGATGACACTCCACCTGCCCAGAGTGCACATCGAGATGAGCAAAACCATAAGATCTTGGCTGATACCTCACTCAATAGCAGTGCTAGACCTAGTGCTCCTGAATCTGAGAATTTACCAGATTATAACAATGAGATAGAAGAAGAAATGCTTCGAGCAGCCATTGAGGCTTCTAAACGGGAGGCTGAGGAAAATTACAGAAGTCACAAACTAGGCAGACAAACTGACTCAACTGAATCAGGATCACAGTCTAGGCAATCGTATTTGGAGGATCCCGAGCTTGCCCATGCAGTTTCATTGTCTCTGAAGACAGCTGAGCAAGAAAAAGCATGGCGTGTACAGGGAGGAGATTCTGAATCTCCACCAGCCGGGCCATCTAAGTCATCAGAGGCTGGACTAGGGGAAGTGGCATCTAATGGAAGGTTGCAGGCAGGAAGCTTGTCCTTTCATGATGAAGCTGAAGATGTAGAGGAGCAGCCACTCGTTAGGAACAGATCTAGGCATATATCTTCAGGATCCACAGGATCAGTCAAAGATGTTGAATTTGCGGAGGCTAGCACACTACCAAGCACAGAGCCACAGGAGACCAGTAATCCTCCTCATAACAGAAATTCCTTCCCCTCTGATGAGTGGGGTGGCATATCTTCAGAGGAGCATGATGAAGCAGTAATGCTTGAAGCTGCAATGTTTGGTGGAATCCCGGAAGGTACTGGATACCAGTATGCTTATGCACCACATGAGTTTATGCACGGTAGGGGTTCTAATCCTCGTCCCTCATATCCCTCATATCGCCCACCTTCTCCAACACTGGCAGCACAGCGTTTGATAAGGGAACAACAGGATGATGAATATCTTGCATCATTACGAGCAGACAGAGAAAAAGAATTGAAGGCCAGAGAAGAAGCTGAGGCTGCTCTTGAAGAGGAAAGGCGGAGAGCAGAAGAAACTCGCAGGAAATTGCAGGAAGAGCAGGAATTGGAAACTCAATTAGCCGCCAAAGAAGTTTCCCTGCCCCCAGAACCATCATCAGATGATGATAACGCTGTTAATTTGCTGGTAAAAATGCCAGATGGCAACCGTCGTGGACGCCGATTCCTAAGATCTAATAGGCTACAGTCTCTGTTCGACTTCATAGACATTGGTAGGGTGGTGAAACCGGGAAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCTTTTAGTGATGAAGAAAGTGCTGCAACCCTGGCTGAACTTGGCCTAACCAACAAGCAAGAAGCTTTGTTTTTGGAGTTAATCTGA 1785 0.4639 MARPNQEAVETFVSITGLPEAVALQKLEEHGGNLNEAVNAHFSEGDRNLTTGSHNSSAAFPQDDFMDIDDQHDADVQRIPSLPALAANLNPFSLLDPTIGRGIFGTPLDSTVQAPFVTHPREVREIPIEVKDGNQSSTQSGHPSIEDVTGTVDADGPDIHGTVIIDNDDDDTPPAQSAHRDEQNHKILADTSLNSSARPSAPESENLPDYNNEIEEEMLRAAIEASKREAEENYRSHKLGRQTDSTESGSQSRQSYLEDPELAHAVSLSLKTAEQEKAWRVQGGDSESPPAGPSKSSEAGLGEVASNGRLQAGSLSFHDEAEDVEEQPLVRNRSRHISSGSTGSVKDVEFAEASTLPSTEPQETSNPPHNRNSFPSDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYQYAYAPHEFMHGRGSNPRPSYPSYRPPSPTLAAQRLIREQQDDEYLASLRADREKELKAREEAEAALEEERRRAEETRRKLQEEQELETQLAAKEVSLPPEPSSDDDNAVNLLVKMPDGNRRGRRFLRSNRLQSLFDFIDIGRVVKPGSYRLVRPYPRRAFSDEESAATLAELGLTNKQEALFLELI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04271 594 SMART uim 214 233 IPR003903 -
Viun3g04271 594 SMART uim 257 276 IPR003903 -
Viun3g04271 594 Gene3D - 210 282 - -
Viun3g04271 594 Gene3D - 1 45 - -
Viun3g04271 594 MobiDBLite consensus disorder prediction 227 242 - -
Viun3g04271 594 SMART ubx_3 509 593 IPR001012 GO:0005515
Viun3g04271 594 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Viun3g04271 594 SUPERFAMILY Ubiquitin-like 475 590 IPR029071 -
Viun3g04271 594 MobiDBLite consensus disorder prediction 131 146 - -
Viun3g04271 594 MobiDBLite consensus disorder prediction 316 332 - -
Viun3g04271 594 CDD UBX 518 592 - -
Viun3g04271 594 MobiDBLite consensus disorder prediction 162 187 - -
Viun3g04271 594 ProSiteProfiles UBX domain profile. 512 590 IPR001012 GO:0005515
Viun3g04271 594 MobiDBLite consensus disorder prediction 243 257 - -
Viun3g04271 594 MobiDBLite consensus disorder prediction 355 379 - -
Viun3g04271 594 MobiDBLite consensus disorder prediction 467 493 - -
Viun3g04271 594 MobiDBLite consensus disorder prediction 126 211 - -
Viun3g04271 594 Gene3D - 513 593 - -
Viun3g04271 594 MobiDBLite consensus disorder prediction 416 437 - -
Viun3g04271 594 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 215 233 IPR003903 -
Viun3g04271 594 MobiDBLite consensus disorder prediction 276 388 - -
Viun3g04271 594 CDD UBA_Ubx1_like 6 42 - -
Viun3g04271 594 MobiDBLite consensus disorder prediction 188 207 - -
Viun3g04271 594 PANTHER FAS-ASSOCIATED PROTEIN 11 593 - -
Viun3g04271 594 Pfam UBX domain 513 592 IPR001012 GO:0005515
Viun3g04271 594 MobiDBLite consensus disorder prediction 227 258 - -
Viun3g04271 594 Coils Coil 453 501 - -
Viun3g04271 594 Pfam UBA-like domain 6 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04271 Viun-Chr3 50486085 50490616 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04271 - - vum:124835115 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04271 3 50486085 50490616 Viun3g04271 3 50486085 50490616 ECH