Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01783 ATGGGAAAACCCCTAGAAGAAAAGTCTGAACCAACCAATAGACAGATCAGAAGTGGTACAAAATGCAATTCTAAACAGACTGTAGAGAAATCAAATGAACGTCCTGAATGGTTACCTGACGGCTGGAATGTGGACTTCAGAACTCGAAGAAGTGGTGCAAATATGGGACATGGGTATAAGTGTTACATTAATCCAAGCGGGAACAAATTCTACTCCAAACCAGAGGTGTTACGATATCTTGAGACTGTAAACAGCAACAGCTGTACTTCCAATAAGGAACAGATATGCAAAGGCAATGATGCAATTGAGAAGTTCACTGCAAAGGATTTACCACCTGGGCTGATAACAGAAATCAAGATTAGGAAGGGAAGCAATGGCAATAGGATAGATCTGGATGTGATTGAAAAGTCCTCAGCGGAGGATTTACCACCTGGGTGGATTACAGAAGCCAAGGTTAGGAAGGGTGGTAATGGCAATAAGAAAGATCTGTTTTATGTAGATCCAGCAAGTGGATATGTATTTCGTTCCAAGAAGGACGCATTGCGCTATCTTAAGTCTGGAGATATAAATACGTGTGTGCTTAAACCATTTAAAAGACATATCAAAGATGAAGATAAAATAACTCCGTCATCTACTGGCAAAAAACAGAAAGTAAAGCACTCTGCCACAAAACGACAACTTTTTGTAGAATTGCCAGATGCTAATGACTTGAAGAAAGGGCAAGTTGTGACAGATTCTTCTGGAATGATGGTTGCTCCTGTTCCCCTGAGTGAACCTCTTGTCACGAATCAATCTTTAGAGAATGCAGTTGCACACTCTCCTGAAATGAAGAAAACATCTGATCCAGATGATGTGCAAGAGAAGAATCGCGTTGTTAATGTGTTGGAGCATGCTAGTAAGAAGAATCATGGCAACCGTAGTTTATCCAAAACCAAGGAGTCAGATGTGGCTCGCCGTGTTTCACGGAGACTTTCTGGGGCAGAACCGGATCAGTTGACCAATGTGGATAATGAACAGACTCTTCAAGTTTCTAAAAGAAACTTGAGAAAAAGTAGAAGTGATTTAGACACTGATTTGACAAATAAATCATTTCAGCAGCTGAATGGTGTCCTAGAAATTGAGCCTTCACATAAAATGCAAGGAGAGGTGCTATTGAACTCCAATAAATCCAGCAACAAGAAAGAGCAACAGATTCTTTGTCGCACTTCAAAACGATTAGCTGGATTTGAACCTGAGCTGAACGGATCCATCTCCAACGAAAGAGCTCCCGAATATAGTAAAAAGTCTAAAGGTAAGGCCACTGCAACCTTCCAGCAAAGTGATGGTCGACCAATAATGGAGCTTGCAGATCATGCATCAATAAATGGCGAGTCATCAAATAAAGGAAGAAAAATTCCTGAAACCAGACCCATAACTTGCGACCAGCTGAAGAAATTTGATGATGAAGAAATGAATAATGATGAGAAATCAGAACCTGAGCAATCCTTAGCATTTCACTATTCTTGGTCTGACCCATGCTTGGAATTTGCGATTCAGACCGTCACAAGTGCATTACCAGCAGAGGATTCAGTTGGTAATTTACCTGCTAGGGTTTCTGAAACTGATATGTTTGCCAAAAATAAGTTGGTTGAGGGTATTTCAGGAAGTAGCAGTGCCAAAAACTCAAGTGTAAACTCAAAGAAATCCAAGAACAAGAAAGAGCTTACAAGGCCTAGGCGTTTGTCAAAGCGACTTGCTGGCAATGAACCTGAGATACTGCCTACTGAAAAAGCTATTGAATATGCCGCTAGAAAATCGTGCAATGAAAAACCTGCTGCTACTGCAATTTTAATTAATGAAGTGTCTGGGCATCTTCATGCCAAGGAAGAATCCAAGCTCATTGTCCAGGAATCTGACAGGTTGAAAACATTATGTGGGGAATCATCAAGCAAGAGTGAGAAGTCATATGATACCCAAACTGTTACCGATGAACAATTGCAAGCTGCAAATGTTGATGATAACAAATCAGATCCACAGTTCCCCTCACCGTTTGGGGACTCCTGGTCAGACCCATGCCTAGAATTTGCAATCAAGACTCTCACTGGTTCTTTGCCAGTTGAAGCTCCTGCTGCTGCTGACATTTTGCCTGTAATGGATATTGATATTAATGACCCACCGAATAAGGAATTACTTGAATGTATGGAGCAGAAGAGTACCAATGAAGAAGCTCGTGATAACCCGAACCCATCCCAGACCAAGAAAGTGTTTAATACTGTTTGCCAGCCACTGAAACAAGACCTGAATCAGCCCGAGTTGACGATCTTTTCCACATCCTGTGGAAATGATCCTAAATTTGCAACTAGAGAGTCTTACAAGGATGAAGTCAGTATAACCAGGAATTCTATTGGGAGAGAATCCCAACGTATTGAAGCTAGCAATGCAAGACAAATTGATATAAACAAAACAATACTTGAAGAAGAGCCTTCAGAGGAAAAACATGTTCTTGAGGGTGAATCTGTGGCAGAAAAACCACAACCCGAAACAATAAACCTTGATTATACTGAAAGAGCATTTTGTGTTCCATTTATGGATTCTTGGTCAGACCCATGCCTAGATTTTGCATTTAAGACTCTTACAGGCACAACAATACCAGTAGAGGAAAACATAGCAATTCAAGGAGGTTTCCAGGAACCGGTGAATCGCCATGACCAGAGAAATGGCAGTTTGACTGTGCCAGATTTTGGATTTACCAGCATTTCTCATAGTCATCGTGGTTTGTCATTTCTCAATGATATAGGGGAGAAGTCCAACCCAGGGCAGCAGTCATCAACGAGTTCTTCATTCCTTCCACAGGAAAAACCGAGCGTGCATGGTTTCTCGGGGGTTGCTCCTCAAGAACAATTCTTTCAGTATAGTAATAATTTTCAGAAAAGGTGA 2916 0.4115 MGKPLEEKSEPTNRQIRSGTKCNSKQTVEKSNERPEWLPDGWNVDFRTRRSGANMGHGYKCYINPSGNKFYSKPEVLRYLETVNSNSCTSNKEQICKGNDAIEKFTAKDLPPGLITEIKIRKGSNGNRIDLDVIEKSSAEDLPPGWITEAKVRKGGNGNKKDLFYVDPASGYVFRSKKDALRYLKSGDINTCVLKPFKRHIKDEDKITPSSTGKKQKVKHSATKRQLFVELPDANDLKKGQVVTDSSGMMVAPVPLSEPLVTNQSLENAVAHSPEMKKTSDPDDVQEKNRVVNVLEHASKKNHGNRSLSKTKESDVARRVSRRLSGAEPDQLTNVDNEQTLQVSKRNLRKSRSDLDTDLTNKSFQQLNGVLEIEPSHKMQGEVLLNSNKSSNKKEQQILCRTSKRLAGFEPELNGSISNERAPEYSKKSKGKATATFQQSDGRPIMELADHASINGESSNKGRKIPETRPITCDQLKKFDDEEMNNDEKSEPEQSLAFHYSWSDPCLEFAIQTVTSALPAEDSVGNLPARVSETDMFAKNKLVEGISGSSSAKNSSVNSKKSKNKKELTRPRRLSKRLAGNEPEILPTEKAIEYAARKSCNEKPAATAILINEVSGHLHAKEESKLIVQESDRLKTLCGESSSKSEKSYDTQTVTDEQLQAANVDDNKSDPQFPSPFGDSWSDPCLEFAIKTLTGSLPVEAPAAADILPVMDIDINDPPNKELLECMEQKSTNEEARDNPNPSQTKKVFNTVCQPLKQDLNQPELTIFSTSCGNDPKFATRESYKDEVSITRNSIGRESQRIEASNARQIDINKTILEEEPSEEKHVLEGESVAEKPQPETINLDYTERAFCVPFMDSWSDPCLDFAFKTLTGTTIPVEENIAIQGGFQEPVNRHDQRNGSLTVPDFGFTSISHSHRGLSFLNDIGEKSNPGQQSSTSSSFLPQEKPSVHGFSGVAPQEQFFQYSNNFQKR 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01783 971 SUPERFAMILY DNA-binding domain 32 88 IPR016177 GO:0003677
Cca06g01783 971 MobiDBLite consensus disorder prediction 297 325 - -
Cca06g01783 971 PANTHER OS04G0193200 PROTEIN 5 130 IPR038945 -
Cca06g01783 971 PANTHER OS04G0193200 PROTEIN 132 377 IPR038945 -
Cca06g01783 971 PANTHER OS04G0193200 PROTEIN 526 961 IPR038945 -
Cca06g01783 971 PANTHER OS04G0193200 PROTEIN 373 523 IPR038945 -
Cca06g01783 971 SMART TAM_2 29 104 IPR001739 GO:0003677
Cca06g01783 971 SMART TAM_2 135 209 IPR001739 GO:0003677
Cca06g01783 971 MobiDBLite consensus disorder prediction 327 342 - -
Cca06g01783 971 Gene3D - 128 227 - -
Cca06g01783 971 Gene3D - 2 104 - -
Cca06g01783 971 MobiDBLite consensus disorder prediction 297 349 - -
Cca06g01783 971 Pfam Methyl-CpG binding domain 29 84 IPR001739 GO:0003677
Cca06g01783 971 Pfam Methyl-CpG binding domain 141 188 IPR001739 GO:0003677
Cca06g01783 971 PANTHER OS04G0193200 PROTEIN 526 961 - -
Cca06g01783 971 PANTHER OS04G0193200 PROTEIN 132 377 - -
Cca06g01783 971 PANTHER OS04G0193200 PROTEIN 373 523 - -
Cca06g01783 971 PANTHER OS04G0193200 PROTEIN 5 130 - -
Cca06g01783 971 MobiDBLite consensus disorder prediction 413 437 - -
Cca06g01783 971 SUPERFAMILY DNA-binding domain 141 198 IPR016177 GO:0003677
Cca06g01783 971 MobiDBLite consensus disorder prediction 1 36 - -
Cca06g01783 971 MobiDBLite consensus disorder prediction 922 952 - -
Cca06g01783 971 MobiDBLite consensus disorder prediction 926 946 - -
Cca06g01783 971 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 28 100 IPR001739 GO:0003677
Cca06g01783 971 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 132 204 IPR001739 GO:0003677
Cca06g01783 971 MobiDBLite consensus disorder prediction 547 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01783 Cca-Chr6 33141498 33151735 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01783 - - vra:106777576 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01783 06 33141498 33151735 Cca06g01783 06 33141498 33151735 ECH
Cca06g01783 06 33141498 33151735 Cca09g02404 09 49420688 49427641 PCT